RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 CBFA2T2O43439 604 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 CPA1P15085 419 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 ARHGAP29Q52LW3 1261 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 METTL24Q5JXM2 366 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 UBE3BQ7Z3V4 1068 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 BRF1Q92994 677 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 DCTPP1Q9H773 170 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 PHF8Q9UPP1 1060 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 ZKSCAN5Q9Y2L8 839 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 SMTNL1A8MU46 457 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 IGSF3O75054 1194 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 NOLC1Q14978 699 aaKnown RBP eCLIP12.55□□□□□ -0.4
CCDC40-204ENST00000397545 CCDC102AQ96A19 550 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 LRP2BPQ9P2M1 347 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 HSP90AA4PQ58FG1 418 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 TMCO3Q6UWJ1 677 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 DDX46Q7L014 1031 aaKnown RBP12.55□□□□□ -0.4
CCDC40-204ENST00000397545 DHX37Q8IY37 1157 aaKnown RBP12.55□□□□□ -0.4
CCDC40-204ENST00000397545 CDK5RAP3Q96JB5 506 aa12.55□□□□□ -0.4
CCDC40-204ENST00000397545 MINDY4BA8MYZ0 360 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 CCDC144CPQ8IYA2 1237 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 AIDAQ96BJ3 306 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 ZBTB9Q96C00 473 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 EVI5LQ96CN4 794 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 NGLY1Q96IV0 654 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 DDX19AQ9NUU7 478 aaKnown RBP12.54□□□□□ -0.4
CCDC40-204ENST00000397545 DACT1Q9NYF0 836 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 CDKL5O76039 1030 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 CT47A1Q5JQC4 288 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-204ENST00000397545 DEF6Q9H4E7 631 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 PA2G4Q9UQ80 394 aaKnown RBP12.54□□□□□ -0.4
CCDC40-204ENST00000397545 SSBP05455 408 aaKnown RBP eCLIP12.54□□□□□ -0.4
CCDC40-204ENST00000397545 HOXC9P31274 260 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 TMC6Q7Z403 805 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 CENPHQ9H3R5 247 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 ZBTB3Q9H5J0 574 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 RAI14Q9P0K7 980 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.54□□□□□ -0.4
CCDC40-204ENST00000397545 V9GYY5 206 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-204ENST00000397545 CEP85Q6P2H3 762 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 CCDC43Q96MW1 224 aaKnown RBP12.54□□□□□ -0.4
CCDC40-204ENST00000397545 ZSWIM4Q9H7M6 989 aa12.54□□□□□ -0.4
CCDC40-204ENST00000397545 MSH6P52701 1360 aa12.53□□□□□ -0.4
CCDC40-204ENST00000397545 EPB41L2O43491 1005 aaKnown RBP12.53□□□□□ -0.4
CCDC40-204ENST00000397545 MCM5P33992 734 aa12.53□□□□□ -0.4
CCDC40-204ENST00000397545 DHX8Q14562 1220 aaKnown RBP12.53□□□□□ -0.4
CCDC40-204ENST00000397545 DDX17Q92841 729 aaKnown RBP12.53□□□□□ -0.4
CCDC40-204ENST00000397545 TANGO6Q9C0B7 1094 aa12.53□□□□□ -0.4
CCDC40-204ENST00000397545 CGNQ9P2M7 1197 aaKnown RBP12.53□□□□□ -0.4
CCDC40-204ENST00000397545 DACH1Q9UI36 760 aa12.53□□□□□ -0.4
CCDC40-204ENST00000397545 GOLGA8BA8MQT2 603 aa12.53□□□□□ -0.4
CCDC40-204ENST00000397545 TOP1P11387 765 aaKnown RBP12.53□□□□□ -0.4
CCDC40-204ENST00000397545 ZFYVE27Q5T4F4 411 aa12.53□□□□□ -0.4
CCDC40-204ENST00000397545 PDIA4P13667 645 aaKnown RBP12.53□□□□□ -0.4
CCDC40-204ENST00000397545 NEK1Q96PY6 1258 aa12.53□□□□□ -0.4
CCDC40-204ENST00000397545 CHPF2Q9P2E5 772 aa12.53□□□□□ -0.4
CCDC40-204ENST00000397545 KIF13AQ9H1H9 1805 aa12.52□□□□□ -0.4
CCDC40-204ENST00000397545 DYNC1I1O14576 645 aa12.52□□□□□ -0.4
CCDC40-204ENST00000397545 SLC3A2P08195 630 aaKnown RBP12.52□□□□□ -0.4
CCDC40-204ENST00000397545 PIP4K2AP48426 406 aaPredicted RBP12.52□□□□□ -0.4
CCDC40-204ENST00000397545 CCAR1Q8IX12 1150 aaKnown RBP12.52□□□□□ -0.4
CCDC40-204ENST00000397545 RBSNQ9H1K0 784 aa12.52□□□□□ -0.4
CCDC40-204ENST00000397545 PPP1R1BQ9UD71 204 aaPredicted RBP12.52□□□□□ -0.4
CCDC40-204ENST00000397545 RBM8AQ9Y5S9 174 aaKnown RBP12.52□□□□□ -0.4
CCDC40-204ENST00000397545 SBNO1A3KN83 1393 aa12.52□□□□□ -0.4
CCDC40-204ENST00000397545 PIK3R4Q99570 1358 aa12.52□□□□□ -0.4
CCDC40-204ENST00000397545 OVOS2A0A0J9YW53 1432 aa12.52□□□□□ -0.41
CCDC40-204ENST00000397545 OVOS2Q6IE36 1432 aa12.52□□□□□ -0.41
CCDC40-204ENST00000397545 USP16Q9Y5T5 823 aa12.52□□□□□ -0.41
CCDC40-204ENST00000397545 KRT18P05783 430 aaKnown RBP12.52□□□□□ -0.41
CCDC40-204ENST00000397545 ANO6Q4KMQ2 910 aa12.52□□□□□ -0.41
CCDC40-204ENST00000397545 UBE2Q2Q8WVN8 375 aa12.52□□□□□ -0.41
CCDC40-204ENST00000397545 USP26Q9BXU7 913 aa12.52□□□□□ -0.41
CCDC40-204ENST00000397545 KIF4BQ2VIQ3 1234 aa12.51□□□□□ -0.41
CCDC40-204ENST00000397545 ZSCAN25Q6NSZ9 544 aa12.51□□□□□ -0.41
CCDC40-204ENST00000397545 LRRC59Q96AG4 307 aaKnown RBP12.51□□□□□ -0.41
CCDC40-204ENST00000397545 ORC3Q9UBD5 711 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-204ENST00000397545 PTCH1Q13635 1447 aa12.51□□□□□ -0.41
CCDC40-204ENST00000397545 ERLIN1O75477 346 aa12.51□□□□□ -0.41
CCDC40-204ENST00000397545 DNAJC25Q9H1X3 360 aa12.51□□□□□ -0.41
CCDC40-204ENST00000397545 EIF5P55010 431 aaKnown RBP12.51□□□□□ -0.41
CCDC40-204ENST00000397545 SETD1AO15047 1707 aaKnown RBP12.51□□□□□ -0.41
CCDC40-204ENST00000397545 CCDC181Q5TID7 509 aa12.51□□□□□ -0.41
CCDC40-204ENST00000397545 BICDL1Q6ZP65 573 aa12.51□□□□□ -0.41
CCDC40-204ENST00000397545 MICU3Q86XE3 530 aa12.51□□□□□ -0.41
CCDC40-204ENST00000397545 NOL7Q9UMY1 257 aaKnown RBP12.51□□□□□ -0.41
CCDC40-204ENST00000397545 ZNF213O14771 459 aa12.5□□□□□ -0.41
CCDC40-204ENST00000397545 GPTP24298 496 aa12.5□□□□□ -0.41
CCDC40-204ENST00000397545 AK2P54819 239 aa12.5□□□□□ -0.41
CCDC40-204ENST00000397545 ATP8B2P98198 1209 aa12.5□□□□□ -0.41
CCDC40-204ENST00000397545 GNL3LQ9NVN8 582 aaKnown RBP12.5□□□□□ -0.41
CCDC40-204ENST00000397545 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-204ENST00000397545 STIM1Q13586 685 aa12.5□□□□□ -0.41
CCDC40-204ENST00000397545 FAM173BQ6P4H8 233 aa12.5□□□□□ -0.41
CCDC40-204ENST00000397545 CNNM3Q8NE01 707 aa12.5□□□□□ -0.41
CCDC40-204ENST00000397545 NAPBQ9H115 298 aa12.5□□□□□ -0.41
CCDC40-204ENST00000397545 UBR1Q8IWV7 1749 aa12.5□□□□□ -0.41
CCDC40-204ENST00000397545 CDR1P51861 262 aa12.5□□□□□ -0.41
CCDC40-204ENST00000397545 KRT28Q7Z3Y7 464 aa12.5□□□□□ -0.41
CCDC40-204ENST00000397545 F13A1P00488 732 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms