RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 PRAMEF22A3QJZ6 481 aa12.63□□□□□ -0.39
NEDD9-203ENST00000397378 GPR25O00155 361 aa12.63□□□□□ -0.39
NEDD9-203ENST00000397378 KCNQ3O43525 872 aa12.63□□□□□ -0.39
NEDD9-203ENST00000397378 ZBTB12Q9Y330 459 aaPredicted RBP12.63□□□□□ -0.39
NEDD9-203ENST00000397378 SZT2Q5T011 3432 aa12.62□□□□□ -0.39
NEDD9-203ENST00000397378 RBBP6Q7Z6E9 1792 aaKnown RBP12.62□□□□□ -0.39
NEDD9-203ENST00000397378 U2SURPO15042 1029 aaKnown RBP12.62□□□□□ -0.39
NEDD9-203ENST00000397378 RBM26Q5T8P6 1007 aaKnown RBP12.62□□□□□ -0.39
NEDD9-203ENST00000397378 DPP8Q6V1X1 898 aaPredicted RBP12.62□□□□□ -0.39
NEDD9-203ENST00000397378 ATP6V0A2Q9Y487 856 aa12.62□□□□□ -0.39
NEDD9-203ENST00000397378 LAMB4A4D0S4 1761 aa12.61□□□□□ -0.39
NEDD9-203ENST00000397378 EGFRP00533 1210 aa12.61□□□□□ -0.39
NEDD9-203ENST00000397378 SNRPA1P09661 255 aaKnown RBP12.61□□□□□ -0.39
NEDD9-203ENST00000397378 KIAA2012Q0VF49 1180 aa12.61□□□□□ -0.39
NEDD9-203ENST00000397378 CC2D1BQ5T0F9 858 aaKnown RBP12.61□□□□□ -0.39
NEDD9-203ENST00000397378 INTS3Q68E01 1043 aaKnown RBP12.61□□□□□ -0.39
NEDD9-203ENST00000397378 SULF1Q8IWU6 871 aa12.61□□□□□ -0.39
NEDD9-203ENST00000397378 YDJCA8MPS7 323 aa12.6□□□□□ -0.39
NEDD9-203ENST00000397378 FKTNO75072 461 aa12.6□□□□□ -0.39
NEDD9-203ENST00000397378 CDCA5Q96FF9 252 aa12.6□□□□□ -0.39
NEDD9-203ENST00000397378 RTFDC1Q9BY42 306 aaPredicted RBP12.6□□□□□ -0.39
NEDD9-203ENST00000397378 CENPFP49454 3210 aa12.59□□□□□ -0.39
NEDD9-203ENST00000397378 NBPF26B4DH59 902 aa12.59□□□□□ -0.39
NEDD9-203ENST00000397378 GPTP24298 496 aa12.59□□□□□ -0.39
NEDD9-203ENST00000397378 NOM1Q5C9Z4 860 aaKnown RBP12.59□□□□□ -0.39
NEDD9-203ENST00000397378 NBPF10Q6P3W6 841 aaKnown RBP12.59□□□□□ -0.39
NEDD9-203ENST00000397378 MPNDQ8N594 471 aa12.59□□□□□ -0.39
NEDD9-203ENST00000397378 DPF2Q92785 391 aa12.59□□□□□ -0.39
NEDD9-203ENST00000397378 PHACTR3Q96KR7 559 aa12.59□□□□□ -0.39
NEDD9-203ENST00000397378 PCGF6Q9BYE7 350 aa12.59□□□□□ -0.39
NEDD9-203ENST00000397378 RSPH6AQ9H0K4 717 aa12.59□□□□□ -0.39
NEDD9-203ENST00000397378 GGA3Q9NZ52 723 aa12.59□□□□□ -0.39
NEDD9-203ENST00000397378 TRIM17Q9Y577 477 aa12.59□□□□□ -0.39
NEDD9-203ENST00000397378 BRCA2P51587 3418 aa12.59□□□□□ -0.39
NEDD9-203ENST00000397378 EN2P19622 333 aaPredicted RBP12.58□□□□□ -0.4
NEDD9-203ENST00000397378 PRKAR2BP31323 418 aa12.58□□□□□ -0.4
NEDD9-203ENST00000397378 KIF4BQ2VIQ3 1234 aa12.58□□□□□ -0.4
NEDD9-203ENST00000397378 NGEFQ8N5V2 710 aa12.58□□□□□ -0.4
NEDD9-203ENST00000397378 PSMD14O00487 310 aa12.57□□□□□ -0.4
NEDD9-203ENST00000397378 C3orf67Q6ZVT6 689 aa12.57□□□□□ -0.4
NEDD9-203ENST00000397378 ABCC4O15439 1325 aa12.57□□□□□ -0.4
NEDD9-203ENST00000397378 HTTP42858 3142 aa12.57□□□□□ -0.4
NEDD9-203ENST00000397378 DLG5Q8TDM6 1919 aa12.56□□□□□ -0.4
NEDD9-203ENST00000397378 IBTKQ9P2D0 1353 aaPredicted RBP12.56□□□□□ -0.4
NEDD9-203ENST00000397378 FKBP1BP68106 108 aa12.56□□□□□ -0.4
NEDD9-203ENST00000397378 MKRN3Q13064 507 aaKnown RBP12.56□□□□□ -0.4
NEDD9-203ENST00000397378 SUSD4Q5VX71 490 aa12.56□□□□□ -0.4
NEDD9-203ENST00000397378 RTF1Q92541 710 aaKnown RBP12.56□□□□□ -0.4
NEDD9-203ENST00000397378 NLRP3Q96P20 1036 aa12.56□□□□□ -0.4
NEDD9-203ENST00000397378 UBN2Q6ZU65 1347 aa12.56□□□□□ -0.4
NEDD9-203ENST00000397378 KDM3BQ7LBC6 1761 aa12.56□□□□□ -0.4
NEDD9-203ENST00000397378 ERVV-1B6SEH8 477 aa12.55□□□□□ -0.4
NEDD9-203ENST00000397378 HTATSF1O43719 755 aaKnown RBP12.55□□□□□ -0.4
NEDD9-203ENST00000397378 TM4SF4P48230 202 aa12.55□□□□□ -0.4
NEDD9-203ENST00000397378 CHRDL2Q6WN34 429 aa12.55□□□□□ -0.4
NEDD9-203ENST00000397378 KIF6Q6ZMV9 814 aa12.55□□□□□ -0.4
NEDD9-203ENST00000397378 MOB2Q70IA6 237 aa12.55□□□□□ -0.4
NEDD9-203ENST00000397378 SP8Q8IXZ3 490 aa12.55□□□□□ -0.4
NEDD9-203ENST00000397378 OTUD5Q96G74 571 aa12.55□□□□□ -0.4
NEDD9-203ENST00000397378 DBNDD1Q9H9R9 158 aa12.55□□□□□ -0.4
NEDD9-203ENST00000397378 ASTN2O75129 1339 aaPredicted RBP12.55□□□□□ -0.4
NEDD9-203ENST00000397378 TRIOBPQ9H2D6 2365 aa12.54□□□□□ -0.4
NEDD9-203ENST00000397378 H0YGN5 161 aa12.54□□□□□ -0.4
NEDD9-203ENST00000397378 RPS12P25398 132 aaKnown RBP12.54□□□□□ -0.4
NEDD9-203ENST00000397378 SREBF2Q12772 1141 aa12.54□□□□□ -0.4
NEDD9-203ENST00000397378 MCM10Q7L590 875 aa12.54□□□□□ -0.4
NEDD9-203ENST00000397378 OTOP1Q7RTM1 612 aa12.54□□□□□ -0.4
NEDD9-203ENST00000397378 CFAP53Q96M91 514 aa12.54□□□□□ -0.4
NEDD9-203ENST00000397378 R3HDMLQ9H3Y0 253 aa12.54□□□□□ -0.4
NEDD9-203ENST00000397378 MAP3K15Q6ZN16 1313 aa12.54□□□□□ -0.4
NEDD9-203ENST00000397378 DUOX1Q9NRD9 1551 aa12.53□□□□□ -0.4
NEDD9-203ENST00000397378 UBE2Q2LH0YL09 131 aa12.53□□□□□ -0.4
NEDD9-203ENST00000397378 BBOX1O75936 387 aa12.53□□□□□ -0.4
NEDD9-203ENST00000397378 NTSR2O95665 410 aa12.53□□□□□ -0.4
NEDD9-203ENST00000397378 TTLL12Q14166 644 aaPredicted RBP12.53□□□□□ -0.4
NEDD9-203ENST00000397378 ANGEL2Q5VTE6 544 aaKnown RBP12.53□□□□□ -0.4
NEDD9-203ENST00000397378 TMEM106CQ9BVX2 250 aa12.53□□□□□ -0.4
NEDD9-203ENST00000397378 ZBTB3Q9H5J0 574 aa12.53□□□□□ -0.4
NEDD9-203ENST00000397378 NUDCQ9Y266 331 aa12.53□□□□□ -0.4
NEDD9-203ENST00000397378 COL6A3P12111 3177 aa12.52□□□□□ -0.41
NEDD9-203ENST00000397378 DDX60Q8IY21 1712 aaKnown RBP12.52□□□□□ -0.41
NEDD9-203ENST00000397378 KIAA0100Q14667 2235 aaKnown RBP12.52□□□□□ -0.41
NEDD9-203ENST00000397378 LAMB2P55268 1798 aa12.52□□□□□ -0.41
NEDD9-203ENST00000397378 TAF7Q15545 349 aaPredicted RBP12.52□□□□□ -0.41
NEDD9-203ENST00000397378 PPP1R42Q7Z4L9 355 aa12.52□□□□□ -0.41
NEDD9-203ENST00000397378 CFHR5Q9BXR6 569 aa12.52□□□□□ -0.41
NEDD9-203ENST00000397378 ANKRD36CQ5JPF3 1778 aa12.51□□□□□ -0.41
NEDD9-203ENST00000397378 RIMBP2O15034 1052 aa12.51□□□□□ -0.41
NEDD9-203ENST00000397378 MNX1P50219 401 aaPredicted RBP12.51□□□□□ -0.41
NEDD9-203ENST00000397378 DCTN1Q14203 1278 aa12.51□□□□□ -0.41
NEDD9-203ENST00000397378 WASHC4Q2M389 1173 aa12.51□□□□□ -0.41
NEDD9-203ENST00000397378 TTLL7Q6ZT98 887 aa12.51□□□□□ -0.41
NEDD9-203ENST00000397378 RBM27Q9P2N5 1060 aaKnown RBP12.51□□□□□ -0.41
NEDD9-203ENST00000397378 PTPN22Q9Y2R2 807 aa12.51□□□□□ -0.41
NEDD9-203ENST00000397378 U2AF1L5P0DN76 240 aaPredicted RBP12.5□□□□□ -0.41
NEDD9-203ENST00000397378 U2AF1Q01081 240 aaKnown RBP eCLIP12.5□□□□□ -0.412e-6■□□□□ 8.9
NEDD9-203ENST00000397378 SCARF1Q14162 830 aa12.5□□□□□ -0.41
NEDD9-203ENST00000397378 ARMC5Q96C12 935 aa12.5□□□□□ -0.41
NEDD9-203ENST00000397378 KCNQ5Q9NR82 932 aa12.5□□□□□ -0.41
NEDD9-203ENST00000397378 SCAF8Q9UPN6 1271 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms