RNA–Protein interactions for RNA: ENST00000396854.8

TM9SF1-202, Transcript of transmembrane 9 superfamily member 1, humanhuman

TSL 1 (best) BASIC

Gene TM9SF1, Length 2,055 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-202ENST00000396854 SSH3Q8TE77 659 aa18.4■□□□□ 0.54
TM9SF1-202ENST00000396854 PDGFDQ9GZP0 370 aaPredicted RBP18.4■□□□□ 0.54
TM9SF1-202ENST00000396854 ANKRD31Q8N7Z5 1873 aa18.4■□□□□ 0.54
TM9SF1-202ENST00000396854 SERPINB2P05120 415 aa18.4■□□□□ 0.54
TM9SF1-202ENST00000396854 SRGAP3O43295 1099 aa18.39■□□□□ 0.53
TM9SF1-202ENST00000396854 CSF1RP07333 972 aa18.39■□□□□ 0.53
TM9SF1-202ENST00000396854 RGS3P49796 1198 aa18.39■□□□□ 0.53
TM9SF1-202ENST00000396854 CNBD1Q8NA66 436 aa18.39■□□□□ 0.53
TM9SF1-202ENST00000396854 CTSWP56202 376 aa18.38■□□□□ 0.53
TM9SF1-202ENST00000396854 MSL1Q68DK7 614 aa18.38■□□□□ 0.53
TM9SF1-202ENST00000396854 LMBR1LQ6UX01 489 aa18.38■□□□□ 0.53
TM9SF1-202ENST00000396854 MMP10P09238 476 aa18.38■□□□□ 0.53
TM9SF1-202ENST00000396854 GTF2E1P29083 439 aaPredicted RBP18.38■□□□□ 0.53
TM9SF1-202ENST00000396854 PRR5LQ6MZQ0 368 aa18.38■□□□□ 0.53
TM9SF1-202ENST00000396854 HCLS1P14317 486 aaPredicted RBP18.37■□□□□ 0.53
TM9SF1-202ENST00000396854 TTLL11Q8NHH1 800 aa18.37■□□□□ 0.53
TM9SF1-202ENST00000396854 R3HDM1Q15032 1099 aaKnown RBP18.37■□□□□ 0.53
TM9SF1-202ENST00000396854 RTL9Q8NET4 1388 aa18.36■□□□□ 0.53
TM9SF1-202ENST00000396854 DCTPP1Q9H773 170 aa18.36■□□□□ 0.53
TM9SF1-202ENST00000396854 PARP3Q9Y6F1 533 aa18.36■□□□□ 0.53
TM9SF1-202ENST00000396854 RFX5P48382 616 aaPredicted RBP18.35■□□□□ 0.53
TM9SF1-202ENST00000396854 ST5P78524 1137 aa18.35■□□□□ 0.53
TM9SF1-202ENST00000396854 SMC5Q8IY18 1101 aa18.35■□□□□ 0.53
TM9SF1-202ENST00000396854 LRP5O75197 1615 aa18.35■□□□□ 0.53
TM9SF1-202ENST00000396854 NPHP1O15259 732 aa18.35■□□□□ 0.53
TM9SF1-202ENST00000396854 SF3B3Q15393 1217 aaKnown RBP18.35■□□□□ 0.53
TM9SF1-202ENST00000396854 GCC1Q96CN9 775 aa18.35■□□□□ 0.53
TM9SF1-202ENST00000396854 SPEF2Q9C093 1822 aa18.34■□□□□ 0.53
TM9SF1-202ENST00000396854 NLRP3Q96P20 1036 aa18.34■□□□□ 0.53
TM9SF1-202ENST00000396854 COPRSQ9NQ92 184 aa18.34■□□□□ 0.53
TM9SF1-202ENST00000396854 CHMP3Q9Y3E7 222 aa18.34■□□□□ 0.53
TM9SF1-202ENST00000396854 KIF13BQ9NQT8 1826 aa18.33■□□□□ 0.53
TM9SF1-202ENST00000396854 CCDC152Q4G0S7 254 aa18.33■□□□□ 0.52
TM9SF1-202ENST00000396854 MTFR1LQ9H019 292 aa18.33■□□□□ 0.52
TM9SF1-202ENST00000396854 GREM2Q9H772 168 aa18.33■□□□□ 0.52
TM9SF1-202ENST00000396854 PTPN12Q05209 780 aaKnown RBP18.32■□□□□ 0.52
TM9SF1-202ENST00000396854 C3orf67Q6ZVT6 689 aa18.32■□□□□ 0.52
TM9SF1-202ENST00000396854 CCDC24Q8N4L8 307 aa18.32■□□□□ 0.52
TM9SF1-202ENST00000396854 TAF1P21675 1872 aa18.32■□□□□ 0.52
TM9SF1-202ENST00000396854 CCDC57Q2TAC2 916 aa18.32■□□□□ 0.52
TM9SF1-202ENST00000396854 DAXXQ9UER7 740 aaPredicted RBP18.32■□□□□ 0.52
TM9SF1-202ENST00000396854 COL11A2P13942 1736 aaPredicted RBP18.32■□□□□ 0.52
TM9SF1-202ENST00000396854 IFIT5Q13325 482 aaKnown RBP18.31■□□□□ 0.52
TM9SF1-202ENST00000396854 PSDA5PKW4 1024 aaPredicted RBP18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 ITGA6P23229 1130 aa18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 CCDC85AQ96PX6 553 aaPredicted RBP18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 PA2G4Q9UQ80 394 aaKnown RBP18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 ANKRD18BA2A2Z9 1011 aa18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 KLRG2A4D1S0 409 aaPredicted RBP18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 SURF6O75683 361 aaKnown RBP18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 ZBTB7AO95365 584 aa18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 CRY2Q49AN0 593 aa18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 BRIP1Q9BX63 1249 aa18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 EXOC6BQ9Y2D4 811 aa18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 COL4A1P02462 1669 aa18.3■□□□□ 0.52
TM9SF1-202ENST00000396854 HSP90AB4PQ58FF6 505 aa18.29■□□□□ 0.52
TM9SF1-202ENST00000396854 KLHDC4Q8TBB5 520 aa18.29■□□□□ 0.52
TM9SF1-202ENST00000396854 FBXO3Q9UK99 471 aa18.29■□□□□ 0.52
TM9SF1-202ENST00000396854 C10orf71Q711Q0 1435 aa18.29■□□□□ 0.52
TM9SF1-202ENST00000396854 A0A1B0GUL6 1792 aa18.29■□□□□ 0.52
TM9SF1-202ENST00000396854 PDZRN3Q9UPQ7 1066 aa18.29■□□□□ 0.52
TM9SF1-202ENST00000396854 DLEC1Q9Y238 1755 aa18.29■□□□□ 0.52
TM9SF1-202ENST00000396854 RAB11FIP3O75154 756 aa18.28■□□□□ 0.52
TM9SF1-202ENST00000396854 CIAO1O76071 339 aa18.27■□□□□ 0.51
TM9SF1-202ENST00000396854 SLC4A3P48751 1232 aa18.27■□□□□ 0.51
TM9SF1-202ENST00000396854 ZNF594Q96JF6 807 aaPredicted RBP18.27■□□□□ 0.51
TM9SF1-202ENST00000396854 SEC31BQ9NQW1 1179 aa18.27■□□□□ 0.51
TM9SF1-202ENST00000396854 PDE6BP35913 854 aa18.26■□□□□ 0.51
TM9SF1-202ENST00000396854 NUCB1Q02818 461 aa18.26■□□□□ 0.51
TM9SF1-202ENST00000396854 G3BP1Q13283 466 aaKnown RBP eCLIP18.26■□□□□ 0.51
TM9SF1-202ENST00000396854 ERC1Q8IUD2 1116 aa18.26■□□□□ 0.51
TM9SF1-202ENST00000396854 CDC5LQ99459 802 aaKnown RBP18.26■□□□□ 0.51
TM9SF1-202ENST00000396854 EYA2O00167 538 aa18.26■□□□□ 0.51
TM9SF1-202ENST00000396854 POLD1P28340 1107 aa18.26■□□□□ 0.51
TM9SF1-202ENST00000396854 TAF7LQ5H9L4 462 aa18.26■□□□□ 0.51
TM9SF1-202ENST00000396854 SGIP1Q9BQI5 828 aa18.26■□□□□ 0.51
TM9SF1-202ENST00000396854 SIL1Q9H173 461 aa18.26■□□□□ 0.51
TM9SF1-202ENST00000396854 NFKBIBQ15653 356 aa18.25■□□□□ 0.51
TM9SF1-202ENST00000396854 KIF1BPQ96EK5 621 aa18.25■□□□□ 0.51
TM9SF1-202ENST00000396854 ATF5Q9Y2D1 282 aaPredicted RBP18.25■□□□□ 0.51
TM9SF1-202ENST00000396854 KIAA1551Q9HCM1 1747 aa18.25■□□□□ 0.51
TM9SF1-202ENST00000396854 CACNA1SQ13698 1873 aa18.25■□□□□ 0.51
TM9SF1-202ENST00000396854 HOXA10P31260 410 aaPredicted RBP18.24■□□□□ 0.51
TM9SF1-202ENST00000396854 OS9Q13438 667 aaPredicted RBP18.24■□□□□ 0.51
TM9SF1-202ENST00000396854 ANKRD45Q5TZF3 282 aa18.24■□□□□ 0.51
TM9SF1-202ENST00000396854 DDX46Q7L014 1031 aaKnown RBP18.24■□□□□ 0.51
TM9SF1-202ENST00000396854 ATG9AQ7Z3C6 839 aa18.24■□□□□ 0.51
TM9SF1-202ENST00000396854 LRRCC1Q9C099 1032 aa18.24■□□□□ 0.51
TM9SF1-202ENST00000396854 IL15P40933 162 aaPredicted RBP18.24■□□□□ 0.51
TM9SF1-202ENST00000396854 CHD1LQ86WJ1 897 aa18.24■□□□□ 0.51
TM9SF1-202ENST00000396854 RHPN1Q8TCX5 695 aa18.24■□□□□ 0.51
TM9SF1-202ENST00000396854 RPGRQ92834 1020 aaKnown RBP18.24■□□□□ 0.51
TM9SF1-202ENST00000396854 LRRC37AA6NMS7 1700 aa18.23■□□□□ 0.51
TM9SF1-202ENST00000396854 SASH1O94885 1247 aa18.23■□□□□ 0.51
TM9SF1-202ENST00000396854 IGHMBP2P38935 993 aaKnown RBP18.23■□□□□ 0.51
TM9SF1-202ENST00000396854 LRRC24Q50LG9 513 aa18.23■□□□□ 0.51
TM9SF1-202ENST00000396854 LDHAL6AQ6ZMR3 332 aa18.23■□□□□ 0.51
TM9SF1-202ENST00000396854 SRGNP10124 158 aa18.22■□□□□ 0.51
TM9SF1-202ENST00000396854 PTGER2P43116 358 aa18.22■□□□□ 0.51
TM9SF1-202ENST00000396854 ANKRD18AQ8IVF6 992 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms