RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 PLCB2Q00722 1185 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 PSME1Q06323 249 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 PROSER3Q2NL68 480 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 ARHGEF25Q86VW2 580 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 PLA2G4DQ86XP0 818 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 GTF3C6Q969F1 213 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 DACT1Q9NYF0 836 aa11.82□□□□□ -0.52
COL17A1-203ENST00000393211 PXDNQ92626 1479 aa11.81□□□□□ -0.52
COL17A1-203ENST00000393211 HMGB1P09429 215 aaKnown RBP11.81□□□□□ -0.52
COL17A1-203ENST00000393211 ZNF710Q8N1W2 664 aa11.81□□□□□ -0.52
COL17A1-203ENST00000393211 CCDC8Q9H0W5 538 aaPredicted RBP11.81□□□□□ -0.52
COL17A1-203ENST00000393211 CBX8Q9HC52 389 aa11.81□□□□□ -0.52
COL17A1-203ENST00000393211 PYCARDQ9ULZ3 195 aa11.81□□□□□ -0.52
COL17A1-203ENST00000393211 ABCC6O95255 1503 aa11.81□□□□□ -0.52
COL17A1-203ENST00000393211 NEMFO60524 1076 aa11.8□□□□□ -0.52
COL17A1-203ENST00000393211 ZNF75DP51815 510 aa11.8□□□□□ -0.52
COL17A1-203ENST00000393211 RESTQ13127 1097 aa11.8□□□□□ -0.52
COL17A1-203ENST00000393211 PDIA6Q15084 440 aa11.8□□□□□ -0.52
COL17A1-203ENST00000393211 ANO6Q4KMQ2 910 aa11.8□□□□□ -0.52
COL17A1-203ENST00000393211 UTP14CQ5TAP6 766 aaKnown RBP11.8□□□□□ -0.52
COL17A1-203ENST00000393211 NEK1Q96PY6 1258 aa11.8□□□□□ -0.52
COL17A1-203ENST00000393211 BOLA2Q9H3K6 86 aa11.8□□□□□ -0.52
COL17A1-203ENST00000393211 NEURL1BA8MQ27 555 aa11.79□□□□□ -0.52
COL17A1-203ENST00000393211 IGKV5-2P06315 115 aa11.79□□□□□ -0.52
COL17A1-203ENST00000393211 GCKRQ14397 625 aa11.79□□□□□ -0.52
COL17A1-203ENST00000393211 NAA16Q6N069 864 aaPredicted RBP11.79□□□□□ -0.52
COL17A1-203ENST00000393211 SARM1Q6SZW1 724 aa11.79□□□□□ -0.52
COL17A1-203ENST00000393211 RIC3Q7Z5B4 369 aa11.79□□□□□ -0.52
COL17A1-203ENST00000393211 FERMT3Q86UX7 667 aa11.79□□□□□ -0.52
COL17A1-203ENST00000393211 ANKRD7Q92527 254 aa11.79□□□□□ -0.52
COL17A1-203ENST00000393211 LRRC59Q96AG4 307 aaKnown RBP11.79□□□□□ -0.52
COL17A1-203ENST00000393211 METTL22Q9BUU2 404 aaPredicted RBP11.79□□□□□ -0.52
COL17A1-203ENST00000393211 MST1RQ04912 1400 aa11.79□□□□□ -0.52
COL17A1-203ENST00000393211 GCP02774 474 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 ADRA2BP18089 450 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 LUZP1Q86V48 1076 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 C17orf53Q8N3J3 647 aaPredicted RBP11.78□□□□□ -0.52
COL17A1-203ENST00000393211 MPNDQ8N594 471 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 SPC24Q8NBT2 197 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 SMARCC2Q8TAQ2 1214 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 ANKRD24Q8TF21 1146 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 BCL2L12Q9HB09 334 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 TLR7Q9NYK1 1049 aaKnown RBP11.78□□□□□ -0.52
COL17A1-203ENST00000393211 PAXBP1Q9Y5B6 917 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 SCN11AQ9UI33 1791 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 SMTNL1A8MU46 457 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 RIOK3O14730 519 aaKnown RBP11.78□□□□□ -0.52
COL17A1-203ENST00000393211 PFKFB2O60825 505 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 PTGS1P23219 599 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 ZNF165P49910 485 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 CAMK4Q16566 473 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 RABL6Q3YEC7 729 aaPredicted RBP11.78□□□□□ -0.52
COL17A1-203ENST00000393211 MCMDC2Q4G0Z9 681 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 TPRNQ4KMQ1 711 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 CCDC186Q7Z3E2 898 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 ZNF589Q86UQ0 364 aaPredicted RBP11.78□□□□□ -0.52
COL17A1-203ENST00000393211 BICD2Q8TD16 824 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 PGBD1Q96JS3 809 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 TRIM5Q9C035 493 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 SETD1BQ9UPS6 1966 aaKnown RBP11.78□□□□□ -0.52
COL17A1-203ENST00000393211 MYH15Q9Y2K3 1946 aa11.78□□□□□ -0.52
COL17A1-203ENST00000393211 SH3TC1Q8TE82 1336 aa11.77□□□□□ -0.53
COL17A1-203ENST00000393211 H3BQV1 296 aa11.77□□□□□ -0.53
COL17A1-203ENST00000393211 RFX5P48382 616 aaPredicted RBP11.77□□□□□ -0.53
COL17A1-203ENST00000393211 TNNI3KQ59H18 835 aa11.77□□□□□ -0.53
COL17A1-203ENST00000393211 IFFO2Q5TF58 517 aa11.77□□□□□ -0.53
COL17A1-203ENST00000393211 ZSCAN25Q6NSZ9 544 aa11.77□□□□□ -0.53
COL17A1-203ENST00000393211 ZNF790Q6PG37 636 aa11.77□□□□□ -0.53
COL17A1-203ENST00000393211 DDX54Q8TDD1 881 aaKnown RBP11.77□□□□□ -0.53
COL17A1-203ENST00000393211 MRFAP1L1Q96HT8 127 aa11.77□□□□□ -0.53
COL17A1-203ENST00000393211 HAUS7Q99871 368 aa11.77□□□□□ -0.53
COL17A1-203ENST00000393211 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.77□□□□□ -0.53
COL17A1-203ENST00000393211 TFIP11Q9UBB9 837 aaKnown RBP11.77□□□□□ -0.53
COL17A1-203ENST00000393211 RCOR1Q9UKL0 485 aa11.77□□□□□ -0.53
COL17A1-203ENST00000393211 PRDM4Q9UKN5 801 aa11.77□□□□□ -0.53
COL17A1-203ENST00000393211 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.77□□□□□ -0.53
COL17A1-203ENST00000393211 FPGT-TNNI3KV9GXZ4 949 aa11.77□□□□□ -0.53
COL17A1-203ENST00000393211 TMEM94Q12767 1356 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 NR1I2O75469 434 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 ESCO1Q5FWF5 840 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 Q6ZUG5 572 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 DRC7Q8IY82 874 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 CKAP2LQ8IYA6 745 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 PDCL2Q8N4E4 241 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 BRF1Q92994 677 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 ZNF396Q96N95 335 aaPredicted RBP11.76□□□□□ -0.53
COL17A1-203ENST00000393211 FEZ1Q99689 392 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 GTPBP4Q9BZE4 634 aaKnown RBP11.76□□□□□ -0.53
COL17A1-203ENST00000393211 HELLSQ9NRZ9 838 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 C5P01031 1676 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 PALLDQ8WX93 1383 aa11.76□□□□□ -0.53
COL17A1-203ENST00000393211 DHX8Q14562 1220 aaKnown RBP11.75□□□□□ -0.53
COL17A1-203ENST00000393211 STX1AQ16623 288 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 FAM173BQ6P4H8 233 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 ANKLE2Q86XL3 938 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 DSCC1Q9BVC3 393 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 AGXT2Q9BYV1 514 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 SIL1Q9H173 461 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 SLC52A2Q9HAB3 445 aa11.75□□□□□ -0.53
COL17A1-203ENST00000393211 GPR108Q9NPR9 543 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms