RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 PCCAP05165 728 aaPredicted RBP27.84■■■□□ 2.05
VPS16-201ENST00000380443 MAP3K15Q6ZN16 1313 aa27.84■■■□□ 2.05
VPS16-201ENST00000380443 L1TD1Q5T7N2 865 aaKnown RBP27.83■■■□□ 2.05
VPS16-201ENST00000380443 KRT27Q7Z3Y8 459 aa27.83■■■□□ 2.05
VPS16-201ENST00000380443 CHMP3Q9Y3E7 222 aa27.83■■■□□ 2.05
VPS16-201ENST00000380443 EYA2O00167 538 aa27.82■■■□□ 2.04
VPS16-201ENST00000380443 BAG4O95429 457 aaKnown RBP27.82■■■□□ 2.04
VPS16-201ENST00000380443 NMIQ13287 307 aaPredicted RBP27.82■■■□□ 2.04
VPS16-201ENST00000380443 GIGYF2Q6Y7W6 1299 aaKnown RBP27.82■■■□□ 2.04
VPS16-201ENST00000380443 ATG9AQ7Z3C6 839 aa27.82■■■□□ 2.04
VPS16-201ENST00000380443 MAP4K1Q92918 833 aa27.82■■■□□ 2.04
VPS16-201ENST00000380443 ZKSCAN1P17029 563 aaPredicted RBP27.81■■■□□ 2.04
VPS16-201ENST00000380443 TTC14Q96N46 770 aa27.81■■■□□ 2.04
VPS16-201ENST00000380443 HAUS7Q99871 368 aa27.81■■■□□ 2.04
VPS16-201ENST00000380443 ISY1Q9ULR0 285 aaKnown RBP27.81■■■□□ 2.04
VPS16-201ENST00000380443 BRWD3Q6RI45 1802 aa27.81■■■□□ 2.04
VPS16-201ENST00000380443 SOCS7O14512 581 aa27.81■■■□□ 2.04
VPS16-201ENST00000380443 CYP19A1P11511 503 aaPredicted RBP27.81■■■□□ 2.04
VPS16-201ENST00000380443 NECTIN1Q15223 517 aa27.81■■■□□ 2.04
VPS16-201ENST00000380443 ZGPATQ8N5A5 531 aaKnown RBP27.81■■■□□ 2.04
VPS16-201ENST00000380443 ZBTB38Q8NAP3 1195 aaPredicted RBP27.8■■■□□ 2.04
VPS16-201ENST00000380443 UPF3BQ9BZI7 483 aaKnown RBP27.8■■■□□ 2.04
VPS16-201ENST00000380443 CDHR2Q9BYE9 1310 aa27.8■■■□□ 2.04
VPS16-201ENST00000380443 RNF20Q5VTR2 975 aa27.79■■■□□ 2.04
VPS16-201ENST00000380443 MED23Q9ULK4 1368 aa27.79■■■□□ 2.04
VPS16-201ENST00000380443 PTH1RQ03431 593 aa27.78■■■□□ 2.04
VPS16-201ENST00000380443 DDB1Q16531 1140 aa27.78■■■□□ 2.04
VPS16-201ENST00000380443 RASEFQ8IZ41 740 aa27.78■■■□□ 2.04
VPS16-201ENST00000380443 ERVV-1B6SEH8 477 aa27.78■■■□□ 2.04
VPS16-201ENST00000380443 CCDC57Q2TAC2 916 aa27.78■■■□□ 2.04
VPS16-201ENST00000380443 PSMA5P28066 241 aa27.77■■■□□ 2.04
VPS16-201ENST00000380443 VPS53Q5VIR6 699 aa27.77■■■□□ 2.04
VPS16-201ENST00000380443 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.77■■■□□ 2.04
VPS16-201ENST00000380443 DBNDD2Q9BQY9 259 aa27.77■■■□□ 2.04
VPS16-201ENST00000380443 ZSWIM6Q9HCJ5 1215 aa27.77■■■□□ 2.04
VPS16-201ENST00000380443 CSF1RP07333 972 aa27.76■■■□□ 2.04
VPS16-201ENST00000380443 IL6STP40189 918 aaPredicted RBP27.76■■■□□ 2.04
VPS16-201ENST00000380443 FAM227BQ96M60 508 aa27.76■■■□□ 2.04
VPS16-201ENST00000380443 HMG20BQ9P0W2 317 aa27.76■■■□□ 2.04
VPS16-201ENST00000380443 LIMCH1Q9UPQ0 1083 aa27.76■■■□□ 2.04
VPS16-201ENST00000380443 ZSCAN31Q96LW9 406 aaPredicted RBP27.76■■■□□ 2.03
VPS16-201ENST00000380443 RBM8AQ9Y5S9 174 aaKnown RBP27.76■■■□□ 2.03
VPS16-201ENST00000380443 AKAP2Q9Y2D5 859 aa27.75■■■□□ 2.03
VPS16-201ENST00000380443 CYP46A1Q9Y6A2 500 aa27.75■■■□□ 2.03
VPS16-201ENST00000380443 KCNJ4P48050 445 aa27.74■■■□□ 2.03
VPS16-201ENST00000380443 PRPF40BQ6NWY9 871 aaKnown RBP27.74■■■□□ 2.03
VPS16-201ENST00000380443 TSGA10IPQ3SY00 556 aa27.74■■■□□ 2.03
VPS16-201ENST00000380443 CREB3L3Q68CJ9 461 aa27.74■■■□□ 2.03
VPS16-201ENST00000380443 CEP126Q9P2H0 1117 aa27.74■■■□□ 2.03
VPS16-201ENST00000380443 ZNF330Q9Y3S2 320 aaPredicted RBP27.74■■■□□ 2.03
VPS16-201ENST00000380443 ZNF609O15014 1411 aa27.73■■■□□ 2.03
VPS16-201ENST00000380443 A0A0D9SFI3 127 aa27.73■■■□□ 2.03
VPS16-201ENST00000380443 KBTBD3Q8NAB2 608 aa27.73■■■□□ 2.03
VPS16-201ENST00000380443 SLC4A9Q96Q91 983 aa27.73■■■□□ 2.03
VPS16-201ENST00000380443 ZSCAN21Q9Y5A6 473 aaPredicted RBP27.73■■■□□ 2.03
VPS16-201ENST00000380443 CASTP20810 708 aaKnown RBP27.72■■■□□ 2.03
VPS16-201ENST00000380443 PRIM1P49642 420 aaKnown RBP27.72■■■□□ 2.03
VPS16-201ENST00000380443 ALDH8A1Q9H2A2 487 aaPredicted RBP27.72■■■□□ 2.03
VPS16-201ENST00000380443 SH2B1Q9NRF2 756 aaPredicted RBP27.72■■■□□ 2.03
VPS16-201ENST00000380443 PALLDQ8WX93 1383 aa27.72■■■□□ 2.03
VPS16-201ENST00000380443 SPEF2Q9C093 1822 aa27.72■■■□□ 2.03
VPS16-201ENST00000380443 BRD1O95696 1058 aa27.71■■■□□ 2.03
VPS16-201ENST00000380443 AK2P54819 239 aa27.71■■■□□ 2.03
VPS16-201ENST00000380443 NLRP10Q86W26 655 aa27.71■■■□□ 2.03
VPS16-201ENST00000380443 ZDHHC9Q9Y397 364 aa27.71■■■□□ 2.03
VPS16-201ENST00000380443 FSD2A1L4K1 749 aa27.71■■■□□ 2.03
VPS16-201ENST00000380443 GOLGA6L3A6NEY3 463 aa27.71■■■□□ 2.03
VPS16-201ENST00000380443 USPL1Q5W0Q7 1092 aa27.71■■■□□ 2.03
VPS16-201ENST00000380443 RUFY3Q7L099 469 aa27.71■■■□□ 2.03
VPS16-201ENST00000380443 JAKMIP1Q96N16 626 aaKnown RBP27.71■■■□□ 2.03
VPS16-201ENST00000380443 PDRG1Q9NUG6 133 aa27.71■■■□□ 2.03
VPS16-201ENST00000380443 ANKRD36CQ5JPF3 1778 aa27.71■■■□□ 2.03
VPS16-201ENST00000380443 DOT1LQ8TEK3 1739 aa27.7■■■□□ 2.03
VPS16-201ENST00000380443 IFIT5Q13325 482 aaKnown RBP27.7■■■□□ 2.02
VPS16-201ENST00000380443 KRT32Q14532 448 aa27.7■■■□□ 2.02
VPS16-201ENST00000380443 KLHL40Q2TBA0 621 aa27.7■■■□□ 2.02
VPS16-201ENST00000380443 SYTL4Q96C24 671 aaPredicted RBP27.7■■■□□ 2.02
VPS16-201ENST00000380443 NEUROD6Q96NK8 337 aa27.7■■■□□ 2.02
VPS16-201ENST00000380443 SLC27A2O14975 620 aa27.69■■■□□ 2.02
VPS16-201ENST00000380443 AK7Q96M32 723 aa27.69■■■□□ 2.02
VPS16-201ENST00000380443 EP400Q96L91 3159 aa27.69■■■□□ 2.02
VPS16-201ENST00000380443 RPAP1Q9BWH6 1393 aaPredicted RBP27.69■■■□□ 2.02
VPS16-201ENST00000380443 TAF5LO75529 589 aa27.69■■■□□ 2.02
VPS16-201ENST00000380443 LRRFIP1Q32MZ4 808 aaKnown RBP27.69■■■□□ 2.02
VPS16-201ENST00000380443 MCMDC2Q4G0Z9 681 aa27.69■■■□□ 2.02
VPS16-201ENST00000380443 LRRC24Q50LG9 513 aa27.69■■■□□ 2.02
VPS16-201ENST00000380443 SH3TC1Q8TE82 1336 aa27.68■■■□□ 2.02
VPS16-201ENST00000380443 PDIA4P13667 645 aaKnown RBP27.68■■■□□ 2.02
VPS16-201ENST00000380443 ANKRD1Q15327 319 aa27.68■■■□□ 2.02
VPS16-201ENST00000380443 DNAJC2Q99543 621 aaKnown RBP27.68■■■□□ 2.02
VPS16-201ENST00000380443 HELLSQ9NRZ9 838 aa27.68■■■□□ 2.02
VPS16-201ENST00000380443 ZBTB1Q9Y2K1 713 aa27.68■■■□□ 2.02
VPS16-201ENST00000380443 U3KPZ7 1027 aaPredicted RBP27.68■■■□□ 2.02
VPS16-201ENST00000380443 CICQ96RK0 1608 aaPredicted RBP27.68■■■□□ 2.02
VPS16-201ENST00000380443 PKP1Q13835 747 aa27.67■■■□□ 2.02
VPS16-201ENST00000380443 FAM196AQ6ZSG2 479 aa27.67■■■□□ 2.02
VPS16-201ENST00000380443 FAM89AQ96GI7 184 aa27.67■■■□□ 2.02
VPS16-201ENST00000380443 WDR33Q9C0J8 1336 aaKnown RBP27.67■■■□□ 2.02
VPS16-201ENST00000380443 A0A1B0GUL7 405 aa27.67■■■□□ 2.02
VPS16-201ENST00000380443 HLFQ16534 295 aa27.67■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms