RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 MATR3P43243 847 aaKnown RBP eCLIP9.92□□□□□ -0.82
LIG3-202ENST00000378526 AMPHP49418 695 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 GNAI1P63096 354 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 TBC1D5Q92609 795 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 FERMT2Q96AC1 680 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 RUNDC1Q96C34 613 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 NACAP1Q9BZK3 213 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 TNIP1Q15025 636 aa9.92□□□□□ -0.82
LIG3-202ENST00000378526 A0A1B0GW55 424 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 DUX4L2P0CJ85 424 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 DUX4L3P0CJ86 424 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 DUX4L4P0CJ87 422 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 DUX4L5P0CJ88 424 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 DUX4L6P0CJ89 424 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 DUX4L7P0CJ90 424 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 NEK1Q96PY6 1258 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 SENP3Q9H4L4 574 aaPredicted RBP9.91□□□□□ -0.82
LIG3-202ENST00000378526 DUX4Q9UBX2 424 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 CTNNA3Q9UI47 895 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 DMTNQ08495 405 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 CABS1Q96KC9 395 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 ZNF165P49910 485 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 TMX1Q9H3N1 280 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 PDRG1Q9NUG6 133 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 DNAI1Q9UI46 699 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 PPP1R12AO14974 1030 aaPredicted RBP9.91□□□□□ -0.82
LIG3-202ENST00000378526 LMNAP02545 664 aaKnown RBP9.91□□□□□ -0.82
LIG3-202ENST00000378526 ERCC5P28715 1186 aaPredicted RBP9.91□□□□□ -0.82
LIG3-202ENST00000378526 TNNC1P63316 161 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 AMPD3Q01432 767 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 CLUL1Q15846 466 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 DEUP1Q05D60 604 aa9.91□□□□□ -0.82
LIG3-202ENST00000378526 FKBP5Q13451 457 aaPredicted RBP9.91□□□□□ -0.82
LIG3-202ENST00000378526 EVI5O60447 810 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 TRIM68Q6AZZ1 485 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 ZSCAN25Q6NSZ9 544 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 RAB3GAP2Q9H2M9 1393 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 LONP1P36776 959 aaKnown RBP9.9□□□□□ -0.82
LIG3-202ENST00000378526 GTF3C6Q969F1 213 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 PHEXP78562 749 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 TEFQ10587 303 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 HEATR3Q7Z4Q2 680 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 CCDC26Q8TAB7 109 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 PIK3R5Q8WYR1 880 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 SCOCQ9UIL1 159 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 RIPOR2Q9Y4F9 1068 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 PNMA8AQ86V59 439 aaPredicted RBP9.9□□□□□ -0.82
LIG3-202ENST00000378526 TEX2Q8IWB9 1127 aa9.9□□□□□ -0.82
LIG3-202ENST00000378526 ABTB1Q969K4 478 aaPredicted RBP9.9□□□□□ -0.82
LIG3-202ENST00000378526 COPG1Q9Y678 874 aaKnown RBP9.9□□□□□ -0.82
LIG3-202ENST00000378526 TTC5Q8N0Z6 440 aa9.9□□□□□ -0.83
LIG3-202ENST00000378526 KCNK9Q9NPC2 374 aa9.9□□□□□ -0.83
LIG3-202ENST00000378526 DHX29Q7Z478 1369 aaKnown RBP9.9□□□□□ -0.83
LIG3-202ENST00000378526 UBAC1Q9BSL1 405 aa9.9□□□□□ -0.83
LIG3-202ENST00000378526 BAIAP2L1Q9UHR4 511 aa9.9□□□□□ -0.83
LIG3-202ENST00000378526 BRD4O60885 1362 aaPredicted RBP9.89□□□□□ -0.83
LIG3-202ENST00000378526 TSC22D3Q99576 134 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 CCDC159P0C7I6 412 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 MYRIPQ8NFW9 859 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 ZSWIM4Q9H7M6 989 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 KCNA4P22459 653 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 DNA2P51530 1060 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 MRPS9P82933 396 aaKnown RBP9.89□□□□□ -0.83
LIG3-202ENST00000378526 CNNM3Q8NE01 707 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 ZSCAN23Q3MJ62 389 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 TTC21AQ8NDW8 1320 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 UBASH3AP57075 661 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 GRAMD4Q6IC98 578 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 CCDC144AA2RUR9 1427 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 NEK2P51955 445 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 INF2Q27J81 1249 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 VSIG1Q86XK7 387 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 STXBP4Q6ZWJ1 553 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 RMND1Q9NWS8 449 aa9.89□□□□□ -0.83
LIG3-202ENST00000378526 PPFIA4O75335 1185 aa9.88□□□□□ -0.83
LIG3-202ENST00000378526 APOEP02649 317 aa9.88□□□□□ -0.83
LIG3-202ENST00000378526 IRX1P78414 480 aaPredicted RBP9.88□□□□□ -0.83
LIG3-202ENST00000378526 CAPN7Q9Y6W3 813 aa9.88□□□□□ -0.83
LIG3-202ENST00000378526 MTIF2P46199 727 aaKnown RBP9.88□□□□□ -0.83
LIG3-202ENST00000378526 CCDC102BQ68D86 513 aa9.88□□□□□ -0.83
LIG3-202ENST00000378526 RRP7AQ9Y3A4 280 aaKnown RBP9.88□□□□□ -0.83
LIG3-202ENST00000378526 ARL1P40616 181 aaPredicted RBP9.88□□□□□ -0.83
LIG3-202ENST00000378526 GJC2Q5T442 439 aaPredicted RBP9.88□□□□□ -0.83
LIG3-202ENST00000378526 SAAL1Q96ER3 474 aa9.88□□□□□ -0.83
LIG3-202ENST00000378526 WASHC2CQ9Y4E1 1318 aa9.88□□□□□ -0.83
LIG3-202ENST00000378526 DUSP27Q5VZP5 1158 aa9.88□□□□□ -0.83
LIG3-202ENST00000378526 CWC27Q6UX04 472 aaKnown RBP9.88□□□□□ -0.83
LIG3-202ENST00000378526 LRRC27Q9C0I9 530 aa9.88□□□□□ -0.83
LIG3-202ENST00000378526 I3L4J1 428 aa9.88□□□□□ -0.83
LIG3-202ENST00000378526 IFT20Q8IY31 132 aa9.88□□□□□ -0.83
LIG3-202ENST00000378526 TMCO4Q5TGY1 634 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 PPP4R3AQ6IN85 833 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 FNBP4Q8N3X1 1017 aaPredicted RBP9.87□□□□□ -0.83
LIG3-202ENST00000378526 UBLCP1Q8WVY7 318 aaPredicted RBP9.87□□□□□ -0.83
LIG3-202ENST00000378526 CSRNP2Q9H175 543 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 WASHC2AQ641Q2 1341 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 ACTN4O43707 911 aaKnown RBP9.87□□□□□ -0.83
LIG3-202ENST00000378526 FCHSD2O94868 740 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 GABPB2Q8TAK5 448 aaPredicted RBP9.87□□□□□ -0.83
LIG3-202ENST00000378526 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms