RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 PLBD2Q8NHP8 589 aa16.99■□□□□ 0.31
CD48-201ENST00000368045 KLHDC4Q8TBB5 520 aa16.99■□□□□ 0.31
CD48-201ENST00000368045 SCAND2PQ9GZW5 306 aaPredicted RBP16.99■□□□□ 0.31
CD48-201ENST00000368045 DBNLQ9UJU6 430 aaKnown RBP16.99■□□□□ 0.31
CD48-201ENST00000368045 RGPD5Q99666 1765 aa16.99■□□□□ 0.31
CD48-201ENST00000368045 KDM4AO75164 1064 aa16.98■□□□□ 0.31
CD48-201ENST00000368045 ZNF589Q86UQ0 364 aaPredicted RBP16.98■□□□□ 0.31
CD48-201ENST00000368045 HAUS7Q99871 368 aa16.98■□□□□ 0.31
CD48-201ENST00000368045 COL18A1P39060 1754 aa16.98■□□□□ 0.31
CD48-201ENST00000368045 HCLS1P14317 486 aaPredicted RBP16.97■□□□□ 0.31
CD48-201ENST00000368045 TFCP2Q12800 502 aa16.97■□□□□ 0.31
CD48-201ENST00000368045 USP16Q9Y5T5 823 aa16.97■□□□□ 0.31
CD48-201ENST00000368045 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.97■□□□□ 0.31
CD48-201ENST00000368045 PKD1L3Q7Z443 1732 aa16.97■□□□□ 0.31
CD48-201ENST00000368045 ADCY5O95622 1261 aa16.97■□□□□ 0.31
CD48-201ENST00000368045 CCDC192P0DO97 292 aa16.97■□□□□ 0.31
CD48-201ENST00000368045 CSB-PGBD3P0DP91 1061 aa16.97■□□□□ 0.31
CD48-201ENST00000368045 ATF3P18847 181 aa16.97■□□□□ 0.31
CD48-201ENST00000368045 CASP7P55210 303 aa16.97■□□□□ 0.31
CD48-201ENST00000368045 GPR108Q9NPR9 543 aa16.97■□□□□ 0.31
CD48-201ENST00000368045 USP25Q9UHP3 1055 aa16.97■□□□□ 0.31
CD48-201ENST00000368045 R3HCC1Q9Y3T6 440 aaKnown RBP16.97■□□□□ 0.31
CD48-201ENST00000368045 CYP27B1O15528 508 aa16.96■□□□□ 0.31
CD48-201ENST00000368045 TPM3P06753 285 aa16.96■□□□□ 0.31
CD48-201ENST00000368045 CDC37L1Q7L3B6 337 aa16.96■□□□□ 0.31
CD48-201ENST00000368045 UBE3BQ7Z3V4 1068 aa16.96■□□□□ 0.31
CD48-201ENST00000368045 DDX54Q8TDD1 881 aaKnown RBP16.96■□□□□ 0.31
CD48-201ENST00000368045 UBE2Q2Q8WVN8 375 aa16.96■□□□□ 0.31
CD48-201ENST00000368045 TMEM94Q12767 1356 aa16.96■□□□□ 0.31
CD48-201ENST00000368045 TCHHQ07283 1943 aa16.96■□□□□ 0.3
CD48-201ENST00000368045 A0A087WZG4 1122 aa16.95■□□□□ 0.3
CD48-201ENST00000368045 MCMDC2Q4G0Z9 681 aa16.95■□□□□ 0.3
CD48-201ENST00000368045 NEK1Q96PY6 1258 aa16.95■□□□□ 0.3
CD48-201ENST00000368045 CPDO75976 1380 aa16.95■□□□□ 0.3
CD48-201ENST00000368045 SH3TC1Q8TE82 1336 aa16.95■□□□□ 0.3
CD48-201ENST00000368045 TNS3Q68CZ2 1445 aa16.95■□□□□ 0.3
CD48-201ENST00000368045 PARP4Q9UKK3 1724 aaKnown RBP16.95■□□□□ 0.3
CD48-201ENST00000368045 HMGB1P09429 215 aaKnown RBP16.94■□□□□ 0.3
CD48-201ENST00000368045 CABP4P57796 275 aa16.94■□□□□ 0.3
CD48-201ENST00000368045 GIMAP6Q6P9H5 292 aa16.94■□□□□ 0.3
CD48-201ENST00000368045 SASS6Q6UVJ0 657 aa16.94■□□□□ 0.3
CD48-201ENST00000368045 TTC6Q86TZ1 520 aa16.94■□□□□ 0.3
CD48-201ENST00000368045 GTF3C6Q969F1 213 aa16.94■□□□□ 0.3
CD48-201ENST00000368045 ZNF609O15014 1411 aa16.94■□□□□ 0.3
CD48-201ENST00000368045 PALLDQ8WX93 1383 aa16.94■□□□□ 0.3
CD48-201ENST00000368045 MAP3K11Q16584 847 aa16.94■□□□□ 0.3
CD48-201ENST00000368045 PIBF1Q8WXW3 757 aa16.94■□□□□ 0.3
CD48-201ENST00000368045 NUP62CLQ9H1M0 184 aa16.94■□□□□ 0.3
CD48-201ENST00000368045 DDX19AQ9NUU7 478 aaKnown RBP16.94■□□□□ 0.3
CD48-201ENST00000368045 H7C1W4 665 aa16.93■□□□□ 0.3
CD48-201ENST00000368045 GLIPR1L2Q4G1C9 344 aa16.93■□□□□ 0.3
CD48-201ENST00000368045 KBTBD3Q8NAB2 608 aa16.93■□□□□ 0.3
CD48-201ENST00000368045 DBNDD2Q9BQY9 259 aa16.93■□□□□ 0.3
CD48-201ENST00000368045 LLPHQ9BRT6 129 aaKnown RBP16.93■□□□□ 0.3
CD48-201ENST00000368045 TAF6LQ9Y6J9 622 aa16.93■□□□□ 0.3
CD48-201ENST00000368045 LAMB4A4D0S4 1761 aa16.93■□□□□ 0.3
CD48-201ENST00000368045 ARFGEF2Q9Y6D5 1785 aa16.92■□□□□ 0.3
CD48-201ENST00000368045 EDC3Q96F86 508 aaKnown RBP16.92■□□□□ 0.3
CD48-201ENST00000368045 HELLSQ9NRZ9 838 aa16.92■□□□□ 0.3
CD48-201ENST00000368045 GLI3P10071 1580 aa16.92■□□□□ 0.3
CD48-201ENST00000368045 GOLGA6L4A6NEF3 574 aa16.92■□□□□ 0.3
CD48-201ENST00000368045 CHMP4CQ96CF2 233 aa16.92■□□□□ 0.3
CD48-201ENST00000368045 SPATA32Q96LK8 384 aa16.92■□□□□ 0.3
CD48-201ENST00000368045 MAP7D2Q96T17 732 aa16.92■□□□□ 0.3
CD48-201ENST00000368045 PDCL3Q9H2J4 239 aa16.92■□□□□ 0.3
CD48-201ENST00000368045 ZSCAN16Q9H4T2 348 aaPredicted RBP16.92■□□□□ 0.3
CD48-201ENST00000368045 DYNC1I1O14576 645 aa16.91■□□□□ 0.3
CD48-201ENST00000368045 FOXO4P98177 505 aa16.91■□□□□ 0.3
CD48-201ENST00000368045 COL9A3Q14050 684 aaPredicted RBP16.91■□□□□ 0.3
CD48-201ENST00000368045 LMBR1LQ6UX01 489 aa16.91■□□□□ 0.3
CD48-201ENST00000368045 FAM200AQ8TCP9 573 aa16.91■□□□□ 0.3
CD48-201ENST00000368045 LEO1Q8WVC0 666 aaPredicted RBP16.91■□□□□ 0.3
CD48-201ENST00000368045 TCEANC2Q96MN5 208 aa16.91■□□□□ 0.3
CD48-201ENST00000368045 DNAJC2Q99543 621 aaKnown RBP16.91■□□□□ 0.3
CD48-201ENST00000368045 DSCC1Q9BVC3 393 aa16.91■□□□□ 0.3
CD48-201ENST00000368045 ATP5J2-PTCD1G3V325 749 aa16.9■□□□□ 0.3
CD48-201ENST00000368045 PTCD1O75127 700 aaKnown RBP16.9■□□□□ 0.3
CD48-201ENST00000368045 IL15P40933 162 aaPredicted RBP16.9■□□□□ 0.3
CD48-201ENST00000368045 RBM43Q6ZSC3 357 aaKnown RBP16.9■□□□□ 0.3
CD48-201ENST00000368045 FERMT3Q86UX7 667 aa16.9■□□□□ 0.3
CD48-201ENST00000368045 CWC25Q9NXE8 425 aaPredicted RBP16.9■□□□□ 0.3
CD48-201ENST00000368045 KIF3AQ9Y496 699 aa16.9■□□□□ 0.3
CD48-201ENST00000368045 AFDNP55196 1824 aaKnown RBP16.9■□□□□ 0.3
CD48-201ENST00000368045 GOLGA6L6A8MZA4 724 aa16.89■□□□□ 0.3
CD48-201ENST00000368045 CYP21A2P08686 494 aa16.89■□□□□ 0.3
CD48-201ENST00000368045 RESTQ13127 1097 aa16.89■□□□□ 0.3
CD48-201ENST00000368045 Q6ZUG5 572 aa16.89■□□□□ 0.3
CD48-201ENST00000368045 CADPS2Q86UW7 1296 aa16.89■□□□□ 0.3
CD48-201ENST00000368045 CLSTN2Q9H4D0 955 aa16.89■□□□□ 0.3
CD48-201ENST00000368045 ATG3Q9NT62 314 aa16.89■□□□□ 0.3
CD48-201ENST00000368045 SPTLC3Q9NUV7 552 aa16.89■□□□□ 0.3
CD48-201ENST00000368045 UQCRHLA0A096LP55 91 aa16.89■□□□□ 0.29
CD48-201ENST00000368045 PFKFB2O60825 505 aa16.89■□□□□ 0.29
CD48-201ENST00000368045 UQCRHP07919 91 aa16.89■□□□□ 0.29
CD48-201ENST00000368045 LIG1P18858 919 aa16.89■□□□□ 0.29
CD48-201ENST00000368045 TYRO3Q06418 890 aa16.89■□□□□ 0.29
CD48-201ENST00000368045 SMARCC2Q8TAQ2 1214 aa16.89■□□□□ 0.29
CD48-201ENST00000368045 SPATA31A3Q5VYP0 1347 aa16.89■□□□□ 0.29
CD48-201ENST00000368045 ERVV-2B6SEH9 535 aa16.88■□□□□ 0.29
CD48-201ENST00000368045 CIAO1O76071 339 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms