RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 FERMT1Q9BQL6 677 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 TRAK2O60296 914 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 SSBP05455 408 aaKnown RBP eCLIP4.3□□□□□ -1.72
SYNE1-207ENST00000367255 RASSF8Q8NHQ8 419 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 IFT57Q9NWB7 429 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 SHANK2Q9UPX8 1470 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 CCDC175P0C221 793 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 PDE1CQ14123 709 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-207ENST00000367255 CAMK4Q16566 473 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 EIF1ADQ8N9N8 165 aaKnown RBP4.3□□□□□ -1.72
SYNE1-207ENST00000367255 TERB1Q8NA31 727 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 SLC17A8Q8NDX2 589 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 NUP155O75694 1391 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 EBAG9O00559 213 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 TRIM29Q14134 588 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 APBB2Q92870 758 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 PANK2Q9BZ23 570 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 RSPH14Q9UHP6 348 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 STK10O94804 968 aaKnown RBP4.3□□□□□ -1.72
SYNE1-207ENST00000367255 CCDC152Q4G0S7 254 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 CCDC68Q9H2F9 335 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 FCHSD2O94868 740 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 MLECQ14165 292 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 IRX1P78414 480 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-207ENST00000367255 E7ENQ6 273 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 CCDC174Q6PII3 467 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 NOC2LQ9Y3T9 749 aaKnown RBP4.3□□□□□ -1.72
SYNE1-207ENST00000367255 C1orf115Q9H7X2 142 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 TBC1D32Q96NH3 1257 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 LLPHQ9BRT6 129 aaKnown RBP4.3□□□□□ -1.72
SYNE1-207ENST00000367255 RAB34Q9BZG1 259 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 ANO10Q9NW15 660 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 GGA2Q9UJY4 613 aa4.3□□□□□ -1.72
SYNE1-207ENST00000367255 RCSD1Q6JBY9 416 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 CNOT10Q9H9A5 744 aaKnown RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 LUC7L2Q9Y383 392 aaKnown RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 USP5P45974 858 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 XPCQ01831 940 aaPredicted RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 ERCC6LQ2NKX8 1250 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 MCTP2Q6DN12 878 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 GRM1Q13255 1194 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 HOMER1Q86YM7 354 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 CNGA4Q8IV77 575 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 PIK3C2GO75747 1445 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 HMGXB3Q12766 1538 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 DDX58O95786 925 aaKnown RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 TUBA4AP68366 448 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 ZNF445P59923 1031 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 BICD2Q8TD16 824 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 JAKMIP1Q96N16 626 aaKnown RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 PICK1Q9NRD5 415 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 TFIP11Q9UBB9 837 aaKnown RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 MTMR7Q9Y216 660 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 DYNC1I2Q13409 638 aaKnown RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 GNL2Q13823 731 aaKnown RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 VWA3BQ502W6 1294 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 AP1ARQ63HQ0 302 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 MICALL1Q8N3F8 863 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 PPP1R12AO14974 1030 aaPredicted RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 SESTD1Q86VW0 696 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 NDUFA13Q9P0J0 144 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 EHBP1L1Q8N3D4 1523 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 EVC2Q86UK5 1308 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 ERO1AQ96HE7 468 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 KIF9Q9HAQ2 790 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 ZBTB41Q5SVQ8 909 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 NAP1L4Q99733 375 aaKnown RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 SPECC1L-ADORA2AF8WAN1 911 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 GOLGA1Q92805 767 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 VCX3AQ9NNX9 186 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 SCAF11Q99590 1463 aaKnown RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 PHLDB3Q6NSJ2 640 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 KRT83P78385 493 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 RUFY4Q6ZNE9 571 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 RASAL2Q9UJF2 1139 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 SYNE3Q6ZMZ3 975 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 TPCN1Q9ULQ1 816 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 GOLGA8TH3BQL2 631 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 GOLGA8HP0CJ92 632 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 NCOA2Q15596 1464 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 SLC26A4O43511 780 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 IFIT2P09913 472 aaKnown RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 NR1H3Q13133 447 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 TRMT1Q9NXH9 659 aaKnown RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 MAN1A1P33908 653 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 NAA16Q6N069 864 aaPredicted RBP4.29□□□□□ -1.72
SYNE1-207ENST00000367255 WDR7Q9Y4E6 1490 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 RUNDC1Q96C34 613 aa4.29□□□□□ -1.72
SYNE1-207ENST00000367255 L3MBTL2Q969R5 705 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 CDCA5Q96FF9 252 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 VAV2P52735 878 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 CCDC43Q96MW1 224 aaKnown RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 ATP5HO75947 161 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 RPL22P35268 128 aaKnown RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 AMOTL1Q8IY63 956 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 PIBF1Q8WXW3 757 aa4.28□□□□□ -1.72
SYNE1-207ENST00000367255 GABPB2Q8TAK5 448 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 ELOA2Q8IYF1 753 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-207ENST00000367255 FAM81BQ96LP2 452 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms