RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-204ENST00000366290 NXF1Q9UBU9 619 aaKnown RBP11.75□□□□□ -0.53
YBX3-204ENST00000366290 SOS2Q07890 1332 aaPredicted RBP11.75□□□□□ -0.53
YBX3-204ENST00000366290 WASHC2CQ9Y4E1 1318 aa11.75□□□□□ -0.53
YBX3-204ENST00000366290 PSMA6P60900 246 aaKnown RBP11.74□□□□□ -0.53
YBX3-204ENST00000366290 SND1Q7KZF4 910 aaKnown RBP eCLIP11.74□□□□□ -0.53
YBX3-204ENST00000366290 STAG2Q8N3U4 1231 aa11.74□□□□□ -0.53
YBX3-204ENST00000366290 COL26A1Q96A83 441 aa11.74□□□□□ -0.53
YBX3-204ENST00000366290 VTI1AQ96AJ9 217 aa11.74□□□□□ -0.53
YBX3-204ENST00000366290 ZSCAN10Q96SZ4 725 aaPredicted RBP11.74□□□□□ -0.53
YBX3-204ENST00000366290 DISP3Q9P2K9 1392 aa11.74□□□□□ -0.53
YBX3-204ENST00000366290 GPC1P35052 558 aa11.73□□□□□ -0.53
YBX3-204ENST00000366290 IQSEC2Q5JU85 1478 aa11.73□□□□□ -0.53
YBX3-204ENST00000366290 C2orf49Q9BVC5 232 aaPredicted RBP11.73□□□□□ -0.53
YBX3-204ENST00000366290 ZNF335Q9H4Z2 1342 aaPredicted RBP11.73□□□□□ -0.53
YBX3-204ENST00000366290 RRP7BPQ9NSQ0 103 aa11.73□□□□□ -0.53
YBX3-204ENST00000366290 DNMT3LQ9UJW3 386 aa11.73□□□□□ -0.53
YBX3-204ENST00000366290 CCDC9Q9Y3X0 531 aaKnown RBP11.73□□□□□ -0.53
YBX3-204ENST00000366290 CEP170BQ9Y4F5 1589 aaPredicted RBP11.73□□□□□ -0.53
YBX3-204ENST00000366290 VWDEQ8N2E2 1590 aa11.72□□□□□ -0.53
YBX3-204ENST00000366290 ARHGAP31Q2M1Z3 1444 aa11.72□□□□□ -0.53
YBX3-204ENST00000366290 FAM50AQ14320 339 aaKnown RBP11.72□□□□□ -0.53
YBX3-204ENST00000366290 A2ML1A8K2U0 1454 aa11.71□□□□□ -0.53
YBX3-204ENST00000366290 PLA2R1Q13018 1463 aa11.71□□□□□ -0.53
YBX3-204ENST00000366290 ROCK1Q13464 1354 aa11.71□□□□□ -0.53
YBX3-204ENST00000366290 ABL1P00519 1130 aa11.71□□□□□ -0.53
YBX3-204ENST00000366290 RNF144AP50876 292 aaPredicted RBP11.71□□□□□ -0.53
YBX3-204ENST00000366290 SLC27A3Q5K4L6 730 aa11.71□□□□□ -0.53
YBX3-204ENST00000366290 TMEM214Q6NUQ4 689 aaKnown RBP11.71□□□□□ -0.53
YBX3-204ENST00000366290 ZNF295-AS1Q8N0V1 137 aa11.71□□□□□ -0.53
YBX3-204ENST00000366290 GRIP2Q9C0E4 1043 aa11.71□□□□□ -0.53
YBX3-204ENST00000366290 POLMQ9NP87 494 aaPredicted RBP11.71□□□□□ -0.53
YBX3-204ENST00000366290 CABP1Q9NZU7 370 aa11.71□□□□□ -0.53
YBX3-204ENST00000366290 CHMP3Q9Y3E7 222 aa11.71□□□□□ -0.53
YBX3-204ENST00000366290 SPATA31D1Q6ZQQ2 1576 aa11.71□□□□□ -0.54
YBX3-204ENST00000366290 LMTK2Q8IWU2 1503 aa11.7□□□□□ -0.54
YBX3-204ENST00000366290 NLRP1Q9C000 1473 aa11.7□□□□□ -0.54
YBX3-204ENST00000366290 RRBP1Q9P2E9 1410 aaKnown RBP11.7□□□□□ -0.54
YBX3-204ENST00000366290 TNRQ92752 1358 aa11.7□□□□□ -0.54
YBX3-204ENST00000366290 CEP152O94986 1710 aa11.7□□□□□ -0.54
YBX3-204ENST00000366290 SOWAHDA6NJG2 315 aa11.7□□□□□ -0.54
YBX3-204ENST00000366290 MAN1A2O60476 641 aa11.7□□□□□ -0.54
YBX3-204ENST00000366290 GTF2E1P29083 439 aaPredicted RBP11.7□□□□□ -0.54
YBX3-204ENST00000366290 CTSOP43234 321 aaPredicted RBP11.7□□□□□ -0.54
YBX3-204ENST00000366290 NAA30Q147X3 362 aaPredicted RBP11.7□□□□□ -0.54
YBX3-204ENST00000366290 TEAD4Q15561 434 aa11.7□□□□□ -0.54
YBX3-204ENST00000366290 FOXD4L5Q5VV16 416 aaPredicted RBP11.7□□□□□ -0.54
YBX3-204ENST00000366290 NPAS3Q8IXF0 933 aa11.7□□□□□ -0.54
YBX3-204ENST00000366290 GTF3C2Q8WUA4 911 aaPredicted RBP11.7□□□□□ -0.54
YBX3-204ENST00000366290 EGFL7Q9UHF1 273 aa11.7□□□□□ -0.54
YBX3-204ENST00000366290 EML1O00423 815 aa11.69□□□□□ -0.54
YBX3-204ENST00000366290 VEGFBP49765 207 aa11.69□□□□□ -0.54
YBX3-204ENST00000366290 ZNF211Q13398 564 aaPredicted RBP11.69□□□□□ -0.54
YBX3-204ENST00000366290 POTEAQ6S8J7 498 aa11.69□□□□□ -0.54
YBX3-204ENST00000366290 RHBDD1Q8TEB9 315 aa11.69□□□□□ -0.54
YBX3-204ENST00000366290 ZDHHC1Q8WTX9 485 aa11.69□□□□□ -0.54
YBX3-204ENST00000366290 ANKRD50Q9ULJ7 1429 aa11.69□□□□□ -0.54
YBX3-204ENST00000366290 SERTM1A2A2V5 107 aa11.68□□□□□ -0.54
YBX3-204ENST00000366290 TTLL8A6PVC2 850 aa11.68□□□□□ -0.54
YBX3-204ENST00000366290 NOS2P35228 1153 aa11.68□□□□□ -0.54
YBX3-204ENST00000366290 SH3PXD2AQ5TCZ1 1133 aa11.68□□□□□ -0.54
YBX3-204ENST00000366290 NIFKQ9BYG3 293 aaKnown RBP11.68□□□□□ -0.54
YBX3-204ENST00000366290 ANO2Q9NQ90 1003 aa11.68□□□□□ -0.54
YBX3-204ENST00000366290 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.68□□□□□ -0.54
YBX3-204ENST00000366290 ZNF232Q9UNY5 417 aa11.68□□□□□ -0.54
YBX3-204ENST00000366290 DNMT3AQ9Y6K1 912 aaPredicted RBP11.68□□□□□ -0.54
YBX3-204ENST00000366290 ERVK-7P63135 1459 aa11.68□□□□□ -0.54
YBX3-204ENST00000366290 H3BM21 787 aa11.67□□□□□ -0.54
YBX3-204ENST00000366290 MFAP1P55081 439 aaKnown RBP11.67□□□□□ -0.54
YBX3-204ENST00000366290 GNASQ5JWF2 1037 aa11.67□□□□□ -0.54
YBX3-204ENST00000366290 L3MBTL2Q969R5 705 aa11.67□□□□□ -0.54
YBX3-204ENST00000366290 PARP3Q9Y6F1 533 aa11.67□□□□□ -0.54
YBX3-204ENST00000366290 HIRAP54198 1017 aaPredicted RBP11.66□□□□□ -0.54
YBX3-204ENST00000366290 CFAP65Q6ZU64 1925 aaKnown RBP11.66□□□□□ -0.54
YBX3-204ENST00000366290 KANK1Q14678 1352 aa11.66□□□□□ -0.54
YBX3-204ENST00000366290 H3BRB1 525 aa11.65□□□□□ -0.54
YBX3-204ENST00000366290 WIPF1O43516 503 aa11.65□□□□□ -0.54
YBX3-204ENST00000366290 ICMTO60725 284 aa11.65□□□□□ -0.54
YBX3-204ENST00000366290 MTMR3Q13615 1198 aa11.65□□□□□ -0.54
YBX3-204ENST00000366290 C16orf46Q6P387 395 aa11.65□□□□□ -0.54
YBX3-204ENST00000366290 RNF217Q8TC41 542 aa11.65□□□□□ -0.54
YBX3-204ENST00000366290 HELQQ8TDG4 1101 aa11.65□□□□□ -0.54
YBX3-204ENST00000366290 TUT1Q9H6E5 874 aaKnown RBP11.65□□□□□ -0.54
YBX3-204ENST00000366290 UNC13BO14795 1591 aa11.65□□□□□ -0.54
YBX3-204ENST00000366290 EFCAB6Q5THR3 1501 aa11.65□□□□□ -0.55
YBX3-204ENST00000366290 NEURL4Q96JN8 1562 aa11.64□□□□□ -0.55
YBX3-204ENST00000366290 SPATA31C2B4DYI2 1134 aa11.64□□□□□ -0.55
YBX3-204ENST00000366290 UBAP1LF5GYI3 381 aa11.64□□□□□ -0.55
YBX3-204ENST00000366290 CCDC27Q2M243 656 aa11.64□□□□□ -0.55
YBX3-204ENST00000366290 C4orf17Q53FE4 359 aa11.64□□□□□ -0.55
YBX3-204ENST00000366290 NGLY1Q96IV0 654 aa11.64□□□□□ -0.55
YBX3-204ENST00000366290 SAP130Q9H0E3 1048 aa11.64□□□□□ -0.55
YBX3-204ENST00000366290 UGGT1Q9NYU2 1555 aa11.63□□□□□ -0.55
YBX3-204ENST00000366290 PLA2G4AP47712 749 aa11.63□□□□□ -0.55
YBX3-204ENST00000366290 FKBP4Q02790 459 aaKnown RBP eCLIP11.63□□□□□ -0.55
YBX3-204ENST00000366290 SF3B2Q13435 895 aaKnown RBP11.63□□□□□ -0.55
YBX3-204ENST00000366290 GLYCTKQ8IVS8 523 aa11.63□□□□□ -0.55
YBX3-204ENST00000366290 SLC16A10Q8TF71 515 aa11.63□□□□□ -0.55
YBX3-204ENST00000366290 QTRT2Q9H974 415 aaKnown RBP11.63□□□□□ -0.55
YBX3-204ENST00000366290 HCN4Q9Y3Q4 1203 aa11.63□□□□□ -0.55
YBX3-204ENST00000366290 RPRD2Q5VT52 1461 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms