RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 PDE4BQ07343 736 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 HDAC9Q9UKV0 1011 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 POLR3GO15318 223 aaPredicted RBP11.65□□□□□ -0.54
CLIP1-202ENST00000358808 ATP2C2O75185 946 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 PDIA4P13667 645 aaKnown RBP11.65□□□□□ -0.54
CLIP1-202ENST00000358808 CCDC6Q16204 474 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 CCDC184Q52MB2 194 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 CEP135Q66GS9 1140 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 DNAJC5Q9H3Z4 198 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 TERF1P54274 439 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 NFE2L2Q16236 605 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 IFI16Q16666 785 aaKnown RBP11.65□□□□□ -0.54
CLIP1-202ENST00000358808 SMC1BQ8NDV3 1235 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 LRRC27Q9C0I9 530 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 SAMD9Q5K651 1589 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 PDE3AQ14432 1141 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 FAM107BQ9H098 131 aa11.65□□□□□ -0.54
CLIP1-202ENST00000358808 PRPF31Q8WWY3 499 aaKnown RBP11.65□□□□□ -0.55
CLIP1-202ENST00000358808 TTC12Q9H892 705 aaPredicted RBP11.65□□□□□ -0.55
CLIP1-202ENST00000358808 JADE2Q9NQC1 790 aa11.65□□□□□ -0.55
CLIP1-202ENST00000358808 UHRF1BP1Q6BDS2 1440 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 UBAP1LF5GYI3 381 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 KRT13P13646 458 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 GSTA5Q7RTV2 222 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 KIF18AQ8NI77 898 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 ERMNQ8TAM6 284 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 PLVAPQ9BX97 442 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 SYCE3A1L190 88 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 RFC4P35249 363 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 CLIP2Q9UDT6 1046 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 GPTP24298 496 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 CKAP4Q07065 602 aaKnown RBP11.64□□□□□ -0.55
CLIP1-202ENST00000358808 KIF1BPQ96EK5 621 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 EXOC1Q9NV70 894 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 NOL3O60936 208 aaKnown RBP11.64□□□□□ -0.55
CLIP1-202ENST00000358808 MCM10Q7L590 875 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 TCHPQ9BT92 498 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 IMPG2Q9BZV3 1241 aa11.64□□□□□ -0.55
CLIP1-202ENST00000358808 KIF4AO95239 1232 aa11.63□□□□□ -0.55
CLIP1-202ENST00000358808 HMGB1P09429 215 aaKnown RBP11.63□□□□□ -0.55
CLIP1-202ENST00000358808 MSH6P52701 1360 aa11.63□□□□□ -0.55
CLIP1-202ENST00000358808 TOM1O60784 492 aa11.63□□□□□ -0.55
CLIP1-202ENST00000358808 EEF2P13639 858 aaKnown RBP11.63□□□□□ -0.55
CLIP1-202ENST00000358808 HAUS7Q99871 368 aa11.63□□□□□ -0.55
CLIP1-202ENST00000358808 IDI1Q13907 227 aa11.63□□□□□ -0.55
CLIP1-202ENST00000358808 EXOC6BQ9Y2D4 811 aa11.63□□□□□ -0.55
CLIP1-202ENST00000358808 ATP2B3Q16720 1220 aa11.63□□□□□ -0.55
CLIP1-202ENST00000358808 PFDN4Q9NQP4 134 aa11.63□□□□□ -0.55
CLIP1-202ENST00000358808 TMEM110-MUSTN1A8MSY1 372 aa11.63□□□□□ -0.55
CLIP1-202ENST00000358808 POTEB2H3BUK9 544 aa11.63□□□□□ -0.55
CLIP1-202ENST00000358808 CCT2P78371 535 aaKnown RBP11.63□□□□□ -0.55
CLIP1-202ENST00000358808 SIRT1Q96EB6 747 aa11.63□□□□□ -0.55
CLIP1-202ENST00000358808 RAB11FIP3O75154 756 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 GLRX3O76003 335 aaKnown RBP11.62□□□□□ -0.55
CLIP1-202ENST00000358808 UBA7P41226 1012 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 RPUSD2Q8IZ73 545 aaKnown RBP11.62□□□□□ -0.55
CLIP1-202ENST00000358808 CDC5LQ99459 802 aaKnown RBP11.62□□□□□ -0.55
CLIP1-202ENST00000358808 HSF2BPO75031 334 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 TTF1Q15361 905 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-202ENST00000358808 TMEM67Q5HYA8 995 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 DUSP27Q5VZP5 1158 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 IPO4Q8TEX9 1081 aaKnown RBP11.62□□□□□ -0.55
CLIP1-202ENST00000358808 SMC6Q96SB8 1091 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 RBM25P49756 843 aaKnown RBP11.62□□□□□ -0.55
CLIP1-202ENST00000358808 GSTO1P78417 241 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 CCDC14Q49A88 953 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 PANK2Q9BZ23 570 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 TRMT1Q9NXH9 659 aaKnown RBP11.62□□□□□ -0.55
CLIP1-202ENST00000358808 TAF7Q15545 349 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-202ENST00000358808 CCDC8Q9H0W5 538 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-202ENST00000358808 RASAL2Q9UJF2 1139 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 DYNC1I1O14576 645 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 ZBTB16Q05516 673 aa11.62□□□□□ -0.55
CLIP1-202ENST00000358808 MVPQ14764 893 aaKnown RBP11.62□□□□□ -0.55
CLIP1-202ENST00000358808 MKRN1Q9UHC7 482 aaKnown RBP11.62□□□□□ -0.55
CLIP1-202ENST00000358808 F8W031 263 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-202ENST00000358808 GMNNO75496 209 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 CRCPO75575 148 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 SKAP1Q86WV1 359 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 CCDC50Q8IVM0 306 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 KIAA1524Q8TCG1 905 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 B4DLN1 442 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 MX1P20591 662 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 MRPL12P52815 198 aaKnown RBP11.61□□□□□ -0.55
CLIP1-202ENST00000358808 TMC6Q7Z403 805 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 FSIP1Q8NA03 581 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 CCT6BQ92526 530 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 TRIM47Q96LD4 638 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 GTPBP4Q9BZE4 634 aaKnown RBP11.61□□□□□ -0.55
CLIP1-202ENST00000358808 NSRP1Q9H0G5 558 aaKnown RBP11.61□□□□□ -0.55
CLIP1-202ENST00000358808 TXNDC16Q9P2K2 825 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 FAM169AQ9Y6X4 670 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 BIN1O00499 593 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 RRP9O43818 475 aaKnown RBP11.61□□□□□ -0.55
CLIP1-202ENST00000358808 NME9Q86XW9 330 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 PROCA1Q8NCQ7 364 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-202ENST00000358808 SHANK2Q9UPX8 1470 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 FAM13AO94988 1023 aa11.61□□□□□ -0.55
CLIP1-202ENST00000358808 PYM1Q9BRP8 204 aaKnown RBP11.61□□□□□ -0.55
CLIP1-202ENST00000358808 SCAND2PQ9GZW5 306 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms