RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CDC5LQ99459 802 aaKnown RBP8.47□□□□□ -1.05
VPS13A-202ENST00000357409 JADE2Q9NQC1 790 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 MAGED2Q9UNF1 606 aaPredicted RBP8.47□□□□□ -1.05
VPS13A-202ENST00000357409 SMIM5Q71RC9 77 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 HINFPQ9BQA5 517 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 GRPEL1Q9HAV7 217 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 WDR33Q9C0J8 1336 aaKnown RBP8.47□□□□□ -1.05
VPS13A-202ENST00000357409 STX6O43752 255 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 IFFO1Q0D2I5 559 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 JAKMIP3Q5VZ66 844 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 TBC1D7Q9P0N9 293 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 U3KPZ7 1027 aaPredicted RBP8.47□□□□□ -1.05
VPS13A-202ENST00000357409 APOBRQ0VD83 1088 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 NBPF14Q5TI25 921 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 TCP10L2B9ZVM9 353 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 SPA17Q15506 151 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 CCDC63Q8NA47 563 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 SMARCC2Q8TAQ2 1214 aa8.47□□□□□ -1.05
VPS13A-202ENST00000357409 UBA7P41226 1012 aa8.46□□□□□ -1.05
VPS13A-202ENST00000357409 FAM160A1Q05DH4 1040 aa8.46□□□□□ -1.05
VPS13A-202ENST00000357409 RASA3Q14644 834 aa8.46□□□□□ -1.05
VPS13A-202ENST00000357409 CALML4Q96GE6 196 aa8.46□□□□□ -1.05
VPS13A-202ENST00000357409 HDAC9Q9UKV0 1011 aa8.46□□□□□ -1.05
VPS13A-202ENST00000357409 DESP17661 470 aa8.46□□□□□ -1.05
VPS13A-202ENST00000357409 Q3C1V9 767 aa8.46□□□□□ -1.05
VPS13A-202ENST00000357409 CEP135Q66GS9 1140 aa8.46□□□□□ -1.05
VPS13A-202ENST00000357409 TSPYL6Q8N831 410 aa8.46□□□□□ -1.05
VPS13A-202ENST00000357409 ATAD2BQ9ULI0 1458 aa8.46□□□□□ -1.06
VPS13A-202ENST00000357409 WASLO00401 505 aaPredicted RBP8.46□□□□□ -1.06
VPS13A-202ENST00000357409 MRE11P49959 708 aa8.46□□□□□ -1.06
VPS13A-202ENST00000357409 CCDC150Q8NCX0 1101 aa8.46□□□□□ -1.06
VPS13A-202ENST00000357409 IRS4O14654 1257 aaPredicted RBP8.46□□□□□ -1.06
VPS13A-202ENST00000357409 GLRX3O76003 335 aaKnown RBP8.46□□□□□ -1.06
VPS13A-202ENST00000357409 LRSAM1Q6UWE0 723 aa8.46□□□□□ -1.06
VPS13A-202ENST00000357409 PPP1R21Q6ZMI0 780 aa8.46□□□□□ -1.06
VPS13A-202ENST00000357409 BAG3O95817 575 aa8.46□□□□□ -1.06
VPS13A-202ENST00000357409 POTEJP0CG39 1038 aa8.46□□□□□ -1.06
VPS13A-202ENST00000357409 EEF2P13639 858 aaKnown RBP8.46□□□□□ -1.06
VPS13A-202ENST00000357409 PLCB3Q01970 1234 aa8.46□□□□□ -1.06
VPS13A-202ENST00000357409 TAB3Q8N5C8 712 aaPredicted RBP8.46□□□□□ -1.06
VPS13A-202ENST00000357409 C16orf45Q96MC5 204 aaPredicted RBP8.46□□□□□ -1.06
VPS13A-202ENST00000357409 ALG1Q9BT22 464 aa8.46□□□□□ -1.06
VPS13A-202ENST00000357409 TOP1P11387 765 aaKnown RBP8.45□□□□□ -1.06
VPS13A-202ENST00000357409 TMEM266Q2M3C6 531 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 FAM173BQ6P4H8 233 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 KIFC2Q96AC6 838 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 Q6ZUG5 572 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 GAPVD1Q14C86 1478 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 PDCP20941 246 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 NAPAP54920 295 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 ERCC4Q92889 916 aaPredicted RBP8.45□□□□□ -1.06
VPS13A-202ENST00000357409 MAGEB6P1A0A0J9YX57 407 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 TNNI2P48788 182 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 CCDC152Q4G0S7 254 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 TTC30AQ86WT1 665 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 CCDC65Q8IXS2 484 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 ZNF287Q9HBT7 754 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 CCDC169A6NNP5 214 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 ARMT1Q9H993 441 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 MTHFSDQ2M296 383 aaKnown RBP8.45□□□□□ -1.06
VPS13A-202ENST00000357409 MBIPQ9NS73 344 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 LMOD1P29536 600 aaPredicted RBP8.45□□□□□ -1.06
VPS13A-202ENST00000357409 SLFN5Q08AF3 891 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 WTAPQ15007 396 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 MYL10Q9BUA6 226 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 AATFQ9NY61 560 aaKnown RBP eCLIP8.45□□□□□ -1.06
VPS13A-202ENST00000357409 DNAJC21Q5F1R6 531 aaKnown RBP8.45□□□□□ -1.06
VPS13A-202ENST00000357409 OTUD7BQ6GQQ9 843 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 TBC1D9Q6ZT07 1266 aa8.45□□□□□ -1.06
VPS13A-202ENST00000357409 DBF4Q9UBU7 674 aaPredicted RBP8.45□□□□□ -1.06
VPS13A-202ENST00000357409 CDKL5O76039 1030 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 MAP3K11Q16584 847 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 DCAF17Q5H9S7 520 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-202ENST00000357409 RNF34Q969K3 372 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 SPATA17Q96L03 361 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 TCP11L1Q9NUJ3 509 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 PTPDC1A2A3K4 754 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 ZRSR2Q15696 482 aaKnown RBP8.44□□□□□ -1.06
VPS13A-202ENST00000357409 ZNF174Q15697 407 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 FAM47AQ5JRC9 791 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 EDC3Q96F86 508 aaKnown RBP8.44□□□□□ -1.06
VPS13A-202ENST00000357409 KIF5BP33176 963 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 IGBP1P78318 339 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 CEP131Q9UPN4 1083 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 TFCP2Q12800 502 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 C4orf50Q6ZRC1 276 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 COBLO75128 1261 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 CALML3P27482 149 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 SCNN1DP51172 638 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 PDE4BQ07343 736 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 KARSQ15046 597 aaKnown RBP8.44□□□□□ -1.06
VPS13A-202ENST00000357409 RRAGBQ5VZM2 374 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 PPP4R4Q6NUP7 873 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 RPAP2Q8IXW5 612 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-202ENST00000357409 LETM2Q2VYF4 491 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 TRAPPC3LQ5T215 181 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 DYMQ7RTS9 669 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 LUZP1Q86V48 1076 aa8.44□□□□□ -1.06
VPS13A-202ENST00000357409 BAZ1AQ9NRL2 1556 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-202ENST00000357409 CLRN2A0PK11 232 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms