RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 SDSP20132 328 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 CETN1Q12798 172 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 SKIDA1Q1XH10 827 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 EHBP1Q8NDI1 1231 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 KCNG4Q8TDN1 519 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 CALML4Q96GE6 196 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 NAA15Q9BXJ9 866 aaKnown RBP13.54□□□□□ -0.24
COL9A1-202ENST00000357250 CNNM2Q9H8M5 875 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 PAXBP1Q9Y5B6 917 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 DCAF8L1A6NGE4 600 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 TMEM67Q5HYA8 995 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 STXBP4Q6ZWJ1 553 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 MRPL50Q8N5N7 158 aaKnown RBP13.54□□□□□ -0.24
COL9A1-202ENST00000357250 MFSD6Q6ZSS7 791 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 KRT23Q9C075 422 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 FAM107BQ9H098 131 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 RMND1Q9NWS8 449 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 NBPF7P0C2Y1 421 aaPredicted RBP13.54□□□□□ -0.24
COL9A1-202ENST00000357250 METAP2P50579 478 aaKnown RBP eCLIP13.54□□□□□ -0.24
COL9A1-202ENST00000357250 SPAG1Q07617 926 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 KLHL10Q6JEL2 608 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 ESYT1Q9BSJ8 1104 aa13.54□□□□□ -0.24
COL9A1-202ENST00000357250 NPC1L1Q9UHC9 1359 aa13.53□□□□□ -0.24
COL9A1-202ENST00000357250 SHTN1A0MZ66 631 aa13.53□□□□□ -0.24
COL9A1-202ENST00000357250 ENOX2Q16206 610 aaKnown RBP13.53□□□□□ -0.24
COL9A1-202ENST00000357250 GTPBP4Q9BZE4 634 aaKnown RBP13.53□□□□□ -0.24
COL9A1-202ENST00000357250 CCDC171Q6TFL3 1326 aa13.53□□□□□ -0.24
COL9A1-202ENST00000357250 RBM25P49756 843 aaKnown RBP13.53□□□□□ -0.24
COL9A1-202ENST00000357250 UBE3BQ7Z3V4 1068 aa13.53□□□□□ -0.24
COL9A1-202ENST00000357250 ANKIB1Q9P2G1 1089 aa13.53□□□□□ -0.24
COL9A1-202ENST00000357250 ADCY5O95622 1261 aa13.53□□□□□ -0.24
COL9A1-202ENST00000357250 PPP4R3AQ6IN85 833 aa13.53□□□□□ -0.24
COL9A1-202ENST00000357250 CKAP2LQ8IYA6 745 aa13.53□□□□□ -0.24
COL9A1-202ENST00000357250 PAF1Q8N7H5 531 aa13.53□□□□□ -0.24
COL9A1-202ENST00000357250 ALS2CR12Q96Q35 445 aa13.53□□□□□ -0.24
COL9A1-202ENST00000357250 GCP02774 474 aa13.52□□□□□ -0.24
COL9A1-202ENST00000357250 CENPHQ9H3R5 247 aa13.52□□□□□ -0.24
COL9A1-202ENST00000357250 IL15P40933 162 aaPredicted RBP13.52□□□□□ -0.24
COL9A1-202ENST00000357250 AKAP4Q5JQC9 854 aa13.52□□□□□ -0.24
COL9A1-202ENST00000357250 KSR2Q6VAB6 950 aa13.52□□□□□ -0.24
COL9A1-202ENST00000357250 RBM27Q9P2N5 1060 aaKnown RBP13.52□□□□□ -0.24
COL9A1-202ENST00000357250 NUP88Q99567 741 aaPredicted RBP13.52□□□□□ -0.25
COL9A1-202ENST00000357250 INSRP06213 1382 aa13.52□□□□□ -0.25
COL9A1-202ENST00000357250 ATP10AO60312 1499 aa13.52□□□□□ -0.25
COL9A1-202ENST00000357250 GCC2Q8IWJ2 1684 aa13.52□□□□□ -0.25
COL9A1-202ENST00000357250 UBA7P41226 1012 aa13.52□□□□□ -0.25
COL9A1-202ENST00000357250 GNAQP50148 359 aa13.52□□□□□ -0.25
COL9A1-202ENST00000357250 RAD50Q92878 1312 aa13.52□□□□□ -0.25
COL9A1-202ENST00000357250 DYNC1I1O14576 645 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 CCT2P78371 535 aaKnown RBP13.51□□□□□ -0.25
COL9A1-202ENST00000357250 GSTO1P78417 241 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 CTAGE1Q96RT6 745 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 DCTPP1Q9H773 170 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 PTPRTO14522 1441 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 GUCY1B3Q02153 619 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 LUZP1Q86V48 1076 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 TAX1BP1Q86VP1 789 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 INTS4Q96HW7 963 aaKnown RBP13.51□□□□□ -0.25
COL9A1-202ENST00000357250 FLT4P35916 1363 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 GRM8O00222 908 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 LINS1Q8NG48 757 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 RPGRQ92834 1020 aaKnown RBP13.51□□□□□ -0.25
COL9A1-202ENST00000357250 SMC5Q8IY18 1101 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 FAM200AQ8TCP9 573 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 PIBF1Q8WXW3 757 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 BABAM1Q9NWV8 329 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 TRIM35Q9UPQ4 493 aa13.51□□□□□ -0.25
COL9A1-202ENST00000357250 ZSCAN23Q3MJ62 389 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 HS1BP3Q53T59 392 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 G2E3Q7L622 706 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 ZGPATQ8N5A5 531 aaKnown RBP13.5□□□□□ -0.25
COL9A1-202ENST00000357250 CRNKL1Q9BZJ0 848 aaKnown RBP13.5□□□□□ -0.25
COL9A1-202ENST00000357250 TAOK3Q9H2K8 898 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 INCENPQ9NQS7 918 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 MTIF2P46199 727 aaKnown RBP13.5□□□□□ -0.25
COL9A1-202ENST00000357250 CCDC96Q2M329 555 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 KAT14Q9H8E8 782 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 TFIP11Q9UBB9 837 aaKnown RBP13.5□□□□□ -0.25
COL9A1-202ENST00000357250 TBX22Q9Y458 520 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 CCDC152Q4G0S7 254 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 MCMDC2Q4G0Z9 681 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 NFATC2IPQ8NCF5 419 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 TUBB4BP68371 445 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 FAM193AP78312 1265 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 TMC6Q7Z403 805 aa13.5□□□□□ -0.25
COL9A1-202ENST00000357250 PPFIA3O75145 1194 aa13.49□□□□□ -0.25
COL9A1-202ENST00000357250 SNW1Q13573 536 aaKnown RBP13.49□□□□□ -0.25
COL9A1-202ENST00000357250 IFI16Q16666 785 aaKnown RBP13.49□□□□□ -0.25
COL9A1-202ENST00000357250 CCDC91Q7Z6B0 441 aa13.49□□□□□ -0.25
COL9A1-202ENST00000357250 SEC24BO95487 1268 aa13.49□□□□□ -0.25
COL9A1-202ENST00000357250 MAGI2Q86UL8 1455 aa13.49□□□□□ -0.25
COL9A1-202ENST00000357250 HOXC9P31274 260 aa13.49□□□□□ -0.25
COL9A1-202ENST00000357250 IL13P35225 146 aa13.49□□□□□ -0.25
COL9A1-202ENST00000357250 MATR3P43243 847 aaKnown RBP eCLIP13.49□□□□□ -0.25
COL9A1-202ENST00000357250 MICALCLQ6ZW33 695 aa13.49□□□□□ -0.25
COL9A1-202ENST00000357250 DDX46Q7L014 1031 aaKnown RBP13.49□□□□□ -0.25
COL9A1-202ENST00000357250 ESR2Q92731 530 aa13.49□□□□□ -0.25
COL9A1-202ENST00000357250 SNRKQ9NRH2 765 aa13.49□□□□□ -0.25
COL9A1-202ENST00000357250 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.49□□□□□ -0.25
COL9A1-202ENST00000357250 TSPY2A6NKD2 308 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms