RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 RBM8AQ9Y5S9 174 aaKnown RBP17.35■□□□□ 0.37
COL17A1-201ENST00000353479 TNIP1Q15025 636 aa17.35■□□□□ 0.37
COL17A1-201ENST00000353479 STX8Q9UNK0 236 aa17.35■□□□□ 0.37
COL17A1-201ENST00000353479 NPHP4O75161 1426 aaPredicted RBP17.35■□□□□ 0.37
COL17A1-201ENST00000353479 MAP3K11Q16584 847 aa17.35■□□□□ 0.37
COL17A1-201ENST00000353479 LRRC2Q9BYS8 371 aa17.35■□□□□ 0.37
COL17A1-201ENST00000353479 NBPF14Q5TI25 921 aa17.34■□□□□ 0.37
COL17A1-201ENST00000353479 METTL22Q9BUU2 404 aaPredicted RBP17.34■□□□□ 0.37
COL17A1-201ENST00000353479 NMIQ13287 307 aaPredicted RBP17.34■□□□□ 0.37
COL17A1-201ENST00000353479 CAGE1Q8TC20 777 aa17.34■□□□□ 0.37
COL17A1-201ENST00000353479 BRF1Q92994 677 aa17.34■□□□□ 0.37
COL17A1-201ENST00000353479 TCEANC2Q96MN5 208 aa17.34■□□□□ 0.37
COL17A1-201ENST00000353479 ZC3H12CQ9C0D7 883 aaKnown RBP17.34■□□□□ 0.37
COL17A1-201ENST00000353479 PICALMQ13492 652 aa17.34■□□□□ 0.37
COL17A1-201ENST00000353479 TBC1D32Q96NH3 1257 aa17.34■□□□□ 0.37
COL17A1-201ENST00000353479 CCDC173Q0VFZ6 552 aa17.34■□□□□ 0.37
COL17A1-201ENST00000353479 ORC3Q9UBD5 711 aaPredicted RBP17.34■□□□□ 0.37
COL17A1-201ENST00000353479 SYCE3A1L190 88 aa17.33■□□□□ 0.37
COL17A1-201ENST00000353479 TTC41PQ6P2S7 1318 aa17.33■□□□□ 0.37
COL17A1-201ENST00000353479 RIMBP2O15034 1052 aa17.33■□□□□ 0.36
COL17A1-201ENST00000353479 HOXB7P09629 217 aa17.33■□□□□ 0.36
COL17A1-201ENST00000353479 SLC26A6Q9BXS9 759 aa17.33■□□□□ 0.36
COL17A1-201ENST00000353479 PDCL3Q9H2J4 239 aa17.33■□□□□ 0.36
COL17A1-201ENST00000353479 HCLS1P14317 486 aaPredicted RBP17.33■□□□□ 0.36
COL17A1-201ENST00000353479 NLRP1Q9C000 1473 aa17.33■□□□□ 0.36
COL17A1-201ENST00000353479 TSPY3P0CV98 308 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 TSPY8P0CW00 308 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 POLD1P28340 1107 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 WTAPQ15007 396 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 PAXIP1Q6ZW49 1069 aaPredicted RBP17.32■□□□□ 0.36
COL17A1-201ENST00000353479 DNAJC10Q8IXB1 793 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 USP19O94966 1318 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 KLF18A0A0U1RQI7 1052 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 MATR3P43243 847 aaKnown RBP eCLIP17.32■□□□□ 0.36
COL17A1-201ENST00000353479 OGFOD1Q8N543 542 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 CNBD1Q8NA66 436 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 GRPEL1Q9HAV7 217 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 HDAC9Q9UKV0 1011 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 ZBTB7BO15156 539 aaPredicted RBP17.32■□□□□ 0.36
COL17A1-201ENST00000353479 ZNF496Q96IT1 587 aaPredicted RBP17.32■□□□□ 0.36
COL17A1-201ENST00000353479 KRT23Q9C075 422 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 JAG2Q9Y219 1238 aa17.32■□□□□ 0.36
COL17A1-201ENST00000353479 ERVK-7P63135 1459 aa17.31■□□□□ 0.36
COL17A1-201ENST00000353479 MAGEB6P1A0A0J9YX57 407 aa17.31■□□□□ 0.36
COL17A1-201ENST00000353479 CBFA2T2O43439 604 aa17.31■□□□□ 0.36
COL17A1-201ENST00000353479 NECAB1Q8N987 351 aa17.31■□□□□ 0.36
COL17A1-201ENST00000353479 ANKRD2Q9GZV1 360 aa17.31■□□□□ 0.36
COL17A1-201ENST00000353479 STX6O43752 255 aa17.31■□□□□ 0.36
COL17A1-201ENST00000353479 CHMP4BP1P59074 171 aa17.31■□□□□ 0.36
COL17A1-201ENST00000353479 DEF6Q9H4E7 631 aa17.31■□□□□ 0.36
COL17A1-201ENST00000353479 TFIP11Q9UBB9 837 aaKnown RBP17.31■□□□□ 0.36
COL17A1-201ENST00000353479 WDHD1O75717 1129 aaPredicted RBP17.31■□□□□ 0.36
COL17A1-201ENST00000353479 MIGA1Q8NAN2 632 aa17.31■□□□□ 0.36
COL17A1-201ENST00000353479 ESR2Q92731 530 aa17.3■□□□□ 0.36
COL17A1-201ENST00000353479 CCDC87Q9NVE4 849 aa17.3■□□□□ 0.36
COL17A1-201ENST00000353479 SH3TC1Q8TE82 1336 aa17.3■□□□□ 0.36
COL17A1-201ENST00000353479 ITGA6P23229 1130 aa17.3■□□□□ 0.36
COL17A1-201ENST00000353479 PARP10Q53GL7 1025 aa17.3■□□□□ 0.36
COL17A1-201ENST00000353479 MAGEB6Q8N7X4 407 aa17.3■□□□□ 0.36
COL17A1-201ENST00000353479 RNF113AO15541 343 aaKnown RBP17.3■□□□□ 0.36
COL17A1-201ENST00000353479 CCDC12Q8WUD4 166 aaPredicted RBP17.3■□□□□ 0.36
COL17A1-201ENST00000353479 TNPO1Q92973 898 aaKnown RBP17.3■□□□□ 0.36
COL17A1-201ENST00000353479 TMEM266Q2M3C6 531 aa17.3■□□□□ 0.36
COL17A1-201ENST00000353479 SPATA31E1Q6ZUB1 1445 aa17.3■□□□□ 0.36
COL17A1-201ENST00000353479 CCDC191Q8NCU4 936 aa17.3■□□□□ 0.36
COL17A1-201ENST00000353479 GDPD2Q9HCC8 539 aa17.3■□□□□ 0.36
COL17A1-201ENST00000353479 RAB34Q9BZG1 259 aa17.29■□□□□ 0.36
COL17A1-201ENST00000353479 ROBO2Q9HCK4 1378 aa17.29■□□□□ 0.36
COL17A1-201ENST00000353479 SMTNL1A8MU46 457 aa17.29■□□□□ 0.36
COL17A1-201ENST00000353479 KLHDC4Q8TBB5 520 aa17.29■□□□□ 0.36
COL17A1-201ENST00000353479 EIF4A1P60842 406 aaKnown RBP17.29■□□□□ 0.36
COL17A1-201ENST00000353479 IFIT1BQ5T764 474 aaKnown RBP17.29■□□□□ 0.36
COL17A1-201ENST00000353479 RBM17Q96I25 401 aaKnown RBP17.29■□□□□ 0.36
COL17A1-201ENST00000353479 CNNM2Q9H8M5 875 aa17.29■□□□□ 0.36
COL17A1-201ENST00000353479 ZMYM4Q5VZL5 1548 aa17.29■□□□□ 0.36
COL17A1-201ENST00000353479 CCP110O43303 1012 aa17.28■□□□□ 0.36
COL17A1-201ENST00000353479 TMX3Q96JJ7 454 aa17.28■□□□□ 0.36
COL17A1-201ENST00000353479 PLEKHM2Q8IWE5 1019 aa17.28■□□□□ 0.36
COL17A1-201ENST00000353479 STK32BQ9NY57 414 aa17.28■□□□□ 0.36
COL17A1-201ENST00000353479 ZBTB43O43298 467 aa17.28■□□□□ 0.36
COL17A1-201ENST00000353479 SBNO2Q9Y2G9 1366 aa17.28■□□□□ 0.36
COL17A1-201ENST00000353479 KLHL10Q6JEL2 608 aa17.28■□□□□ 0.36
COL17A1-201ENST00000353479 IBSPP21815 317 aaPredicted RBP17.28■□□□□ 0.36
COL17A1-201ENST00000353479 EYA2O00167 538 aa17.27■□□□□ 0.36
COL17A1-201ENST00000353479 TIMM10P62072 90 aa17.27■□□□□ 0.36
COL17A1-201ENST00000353479 SMC5Q8IY18 1101 aa17.27■□□□□ 0.36
COL17A1-201ENST00000353479 EHMT1Q9H9B1 1298 aa17.27■□□□□ 0.36
COL17A1-201ENST00000353479 PHKG2P15735 406 aa17.27■□□□□ 0.35
COL17A1-201ENST00000353479 Q6ZUG5 572 aa17.27■□□□□ 0.35
COL17A1-201ENST00000353479 FILIP1Q7Z7B0 1213 aa17.27■□□□□ 0.35
COL17A1-201ENST00000353479 ZNF594Q96JF6 807 aaPredicted RBP17.27■□□□□ 0.35
COL17A1-201ENST00000353479 MYOM2P54296 1465 aa17.27■□□□□ 0.35
COL17A1-201ENST00000353479 PRDM15P57071 1507 aaPredicted RBP17.27■□□□□ 0.35
COL17A1-201ENST00000353479 NOM1Q5C9Z4 860 aaKnown RBP17.27■□□□□ 0.35
COL17A1-201ENST00000353479 ERVV-2B6SEH9 535 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 PDE8AO60658 829 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 VEZTQ9HBM0 779 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 FAM135BQ49AJ0 1406 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 FSIP1Q8NA03 581 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 CCDC183Q5T5S1 534 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms