RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 SIL1Q9H173 461 aa10.43□□□□□ -0.74
TRIM55-204ENST00000353317 NCLP19338 710 aaKnown RBP10.42□□□□□ -0.74
TRIM55-204ENST00000353317 PTPN12Q05209 780 aaKnown RBP10.42□□□□□ -0.74
TRIM55-204ENST00000353317 KIF6Q6ZMV9 814 aa10.42□□□□□ -0.74
TRIM55-204ENST00000353317 NLRP10Q86W26 655 aa10.42□□□□□ -0.74
TRIM55-204ENST00000353317 CWC22Q9HCG8 908 aaKnown RBP10.42□□□□□ -0.74
TRIM55-204ENST00000353317 ZDHHC9Q9Y397 364 aa10.42□□□□□ -0.74
TRIM55-204ENST00000353317 ST18O60284 1047 aa10.42□□□□□ -0.74
TRIM55-204ENST00000353317 CAMTA2O94983 1202 aa10.42□□□□□ -0.74
TRIM55-204ENST00000353317 PDE1AP54750 535 aa10.42□□□□□ -0.74
TRIM55-204ENST00000353317 CASC1Q6TDU7 716 aa10.42□□□□□ -0.74
TRIM55-204ENST00000353317 TRIM28Q13263 835 aaKnown RBP10.41□□□□□ -0.74
TRIM55-204ENST00000353317 PRPF40AO75400 957 aaKnown RBP10.41□□□□□ -0.74
TRIM55-204ENST00000353317 REC8O95072 547 aa10.41□□□□□ -0.74
TRIM55-204ENST00000353317 KRT27Q7Z3Y8 459 aa10.41□□□□□ -0.74
TRIM55-204ENST00000353317 ZSCAN30Q86W11 494 aa10.41□□□□□ -0.74
TRIM55-204ENST00000353317 ZNF34Q8IZ26 560 aa10.41□□□□□ -0.74
TRIM55-204ENST00000353317 GPT2Q8TD30 523 aa10.41□□□□□ -0.74
TRIM55-204ENST00000353317 ANP32BQ92688 251 aaKnown RBP10.41□□□□□ -0.74
TRIM55-204ENST00000353317 ZNF594Q96JF6 807 aaPredicted RBP10.41□□□□□ -0.74
TRIM55-204ENST00000353317 CHAMP1Q96JM3 812 aa10.41□□□□□ -0.74
TRIM55-204ENST00000353317 CCDC85AQ96PX6 553 aaPredicted RBP10.41□□□□□ -0.74
TRIM55-204ENST00000353317 TRIM37O94972 964 aa10.4□□□□□ -0.74
TRIM55-204ENST00000353317 COL15A1P39059 1388 aa10.4□□□□□ -0.74
TRIM55-204ENST00000353317 HSP90AA2PQ14568 343 aaPredicted RBP10.4□□□□□ -0.74
TRIM55-204ENST00000353317 ERC2O15083 957 aa10.4□□□□□ -0.74
TRIM55-204ENST00000353317 RBSNQ9H1K0 784 aa10.4□□□□□ -0.74
TRIM55-204ENST00000353317 MYH3P11055 1940 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 FAM177BA6PVY3 158 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 ERVV-1B6SEH8 477 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 RRP9O43818 475 aaKnown RBP10.39□□□□□ -0.75
TRIM55-204ENST00000353317 SUSD4Q5VX71 490 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 POTEAQ6S8J7 498 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 PROM2Q8N271 834 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 EAF2Q96CJ1 260 aaPredicted RBP10.39□□□□□ -0.75
TRIM55-204ENST00000353317 BCL11BQ9C0K0 894 aaPredicted RBP10.39□□□□□ -0.75
TRIM55-204ENST00000353317 OSBPL3Q9H4L5 887 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 BCL2L12Q9HB09 334 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 TLR7Q9NYK1 1049 aaKnown RBP10.39□□□□□ -0.75
TRIM55-204ENST00000353317 RBM27Q9P2N5 1060 aaKnown RBP10.39□□□□□ -0.75
TRIM55-204ENST00000353317 CCNL1Q9UK58 526 aaPredicted RBP10.39□□□□□ -0.75
TRIM55-204ENST00000353317 BCORQ6W2J9 1755 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 RAB11FIP3O75154 756 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 ZBTB38Q8NAP3 1195 aaPredicted RBP10.39□□□□□ -0.75
TRIM55-204ENST00000353317 KIF1BPQ96EK5 621 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 PUS3Q9BZE2 481 aaKnown RBP10.39□□□□□ -0.75
TRIM55-204ENST00000353317 SRP68Q9UHB9 627 aaKnown RBP10.39□□□□□ -0.75
TRIM55-204ENST00000353317 TAF1P21675 1872 aa10.39□□□□□ -0.75
TRIM55-204ENST00000353317 PCCAP05165 728 aaPredicted RBP10.38□□□□□ -0.75
TRIM55-204ENST00000353317 MX1P20591 662 aa10.38□□□□□ -0.75
TRIM55-204ENST00000353317 RBM6P78332 1123 aaKnown RBP10.38□□□□□ -0.75
TRIM55-204ENST00000353317 PI4K2BQ8TCG2 481 aa10.38□□□□□ -0.75
TRIM55-204ENST00000353317 COPRSQ9NQ92 184 aa10.38□□□□□ -0.75
TRIM55-204ENST00000353317 COL4A1P02462 1669 aa10.38□□□□□ -0.75
TRIM55-204ENST00000353317 LRRC24Q50LG9 513 aa10.38□□□□□ -0.75
TRIM55-204ENST00000353317 ATG9AQ7Z3C6 839 aa10.38□□□□□ -0.75
TRIM55-204ENST00000353317 STAP2Q9UGK3 403 aa10.38□□□□□ -0.75
TRIM55-204ENST00000353317 NSFL1CQ9UNZ2 370 aaKnown RBP10.38□□□□□ -0.75
TRIM55-204ENST00000353317 CHMP3Q9Y3E7 222 aa10.38□□□□□ -0.75
TRIM55-204ENST00000353317 CNTNAP4Q9C0A0 1308 aa10.38□□□□□ -0.75
TRIM55-204ENST00000353317 MAP4K4O95819 1239 aaPredicted RBP10.37□□□□□ -0.75
TRIM55-204ENST00000353317 OS9Q13438 667 aaPredicted RBP10.37□□□□□ -0.75
TRIM55-204ENST00000353317 KIAA1211Q6ZU35 1233 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 TMEM63CQ9P1W3 806 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 C4BP0C0L5 1744 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 DDX60Q8IY21 1712 aaKnown RBP10.37□□□□□ -0.75
TRIM55-204ENST00000353317 CSF1RP07333 972 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 MSNP26038 577 aaKnown RBP10.37□□□□□ -0.75
TRIM55-204ENST00000353317 NEK4P51957 841 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 TFCP2Q12800 502 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 ZNF772Q68DY9 489 aaPredicted RBP10.37□□□□□ -0.75
TRIM55-204ENST00000353317 TMX3Q96JJ7 454 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 PDLIM2Q96JY6 352 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 CCDC8Q9H0W5 538 aaPredicted RBP10.37□□□□□ -0.75
TRIM55-204ENST00000353317 TRMT112Q9UI30 125 aaKnown RBP10.37□□□□□ -0.75
TRIM55-204ENST00000353317 GOLGB1Q14789 3259 aaKnown RBP10.37□□□□□ -0.75
TRIM55-204ENST00000353317 CASZ1Q86V15 1759 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 GNPATO15228 680 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 HCLS1P14317 486 aaPredicted RBP10.37□□□□□ -0.75
TRIM55-204ENST00000353317 FOXD4L5Q5VV16 416 aaPredicted RBP10.37□□□□□ -0.75
TRIM55-204ENST00000353317 FAM196AQ6ZSG2 479 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 TTLL11Q8NHH1 800 aa10.37□□□□□ -0.75
TRIM55-204ENST00000353317 FOXD4L4Q8WXT5 416 aaPredicted RBP10.37□□□□□ -0.75
TRIM55-204ENST00000353317 C4AP0C0L4 1744 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 OFD1O75665 1012 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 RPS6KA4O75676 772 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 G3BP1Q13283 466 aaKnown RBP eCLIP10.36□□□□□ -0.75
TRIM55-204ENST00000353317 USPL1Q5W0Q7 1092 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 ARHGEF1Q92888 912 aaKnown RBP10.36□□□□□ -0.75
TRIM55-204ENST00000353317 IL25Q9H293 177 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 GREM2Q9H772 168 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 HDAC5Q9UQL6 1122 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 UBR3Q6ZT12 1888 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 SYCE3A1L190 88 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 IRS4O14654 1257 aaPredicted RBP10.36□□□□□ -0.75
TRIM55-204ENST00000353317 TPM2P07951 284 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 RC3H1Q5TC82 1133 aaKnown RBP10.36□□□□□ -0.75
TRIM55-204ENST00000353317 TBC1D9BQ66K14 1250 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 PLA2G12BQ9BX93 195 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms