RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 CICQ96RK0 1608 aaPredicted RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 KIF13AQ9H1H9 1805 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 TAF12Q16514 161 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 SMYD5Q6GMV2 418 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 SPC24Q8NBT2 197 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 TCHPQ9BT92 498 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 PHAXQ9H814 394 aaKnown RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 EHMT1Q9H9B1 1298 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 HAUS2Q9NVX0 235 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 SLAIN2Q9P270 581 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 SCAF11Q99590 1463 aaKnown RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 UQCRHLA0A096LP55 91 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 ZSCAN12O43309 604 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 INTS3Q68E01 1043 aaKnown RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 SMCR8Q8TEV9 937 aaPredicted RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 PNISRQ8TF01 805 aaKnown RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 MYH3P11055 1940 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 BMP15O95972 392 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 HOXC8P31273 242 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC38Q502W7 563 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 CFAP70Q5T0N1 1121 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 SLC4A10Q6U841 1118 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 SPATS2Q86XZ4 545 aaKnown RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 ARFGAP2Q8N6H7 521 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC97Q96F63 343 aaPredicted RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 BCAP29Q9UHQ4 241 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 SLX4Q8IY92 1834 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 OFD1O75665 1012 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 ZC3H12CQ9C0D7 883 aaKnown RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 RCAN3Q9UKA8 241 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 RIMS2Q9UQ26 1411 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 GCOM1H8Y6P7 765 aaPredicted RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 MYZAPP0CAP1 466 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 ATP6V1AP38606 617 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 AMER1Q5JTC6 1135 aaPredicted RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 TRIM22Q8IYM9 498 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 RAB34Q9BZG1 259 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 SPEF2Q9C093 1822 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 UQCRHP07919 91 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 IFI16Q16666 785 aaKnown RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 NBPF6Q5VWK0 638 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 NBPF5PQ86XG9 351 aaPredicted RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 WASF1Q92558 559 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 NBPF4Q96M43 638 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 CABP5Q9NP86 173 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 SMC1AQ14683 1233 aaKnown RBP3.8□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC57Q2TAC2 916 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC14Q49A88 953 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 CFAP157Q5JU67 520 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 TMCO3Q6UWJ1 677 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 MBIPQ9NS73 344 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 TMEM131LA2VDJ0 1609 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 XPCQ01831 940 aaPredicted RBP3.8□□□□□ -1.8
CSMD3-202ENST00000339701 IDI1Q13907 227 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 SLMAPQ14BN4 828 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 CPLX3Q8WVH0 158 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 GSDMDP57764 484 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 IRX4P78413 519 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 PPP2R5EQ16537 467 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 ARMC9Q7Z3E5 817 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 ZNF396Q96N95 335 aaPredicted RBP3.8□□□□□ -1.8
CSMD3-202ENST00000339701 FAM50BQ9Y247 325 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 AMOTL2Q9Y2J4 779 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 MON2Q7Z3U7 1717 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 KINO60870 393 aaKnown RBP3.8□□□□□ -1.8
CSMD3-202ENST00000339701 NOLC1Q14978 699 aaKnown RBP eCLIP3.8□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC50Q8IVM0 306 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 LRRC27Q9C0I9 530 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 MRGBPQ9NV56 204 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 ANKARQ7Z5J8 1434 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 H3BQV1 296 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 HLA-DOAP06340 250 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 PLCB2Q00722 1185 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 SYCP1Q15431 976 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 IFFO2Q5TF58 517 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC129Q6ZRS4 1044 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 JAKMIP2Q96AA8 810 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 IQSEC3Q9UPP2 1182 aaPredicted RBP3.8□□□□□ -1.8
CSMD3-202ENST00000339701 ARHGEF10O15013 1369 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 GRIPAP1Q4V328 841 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 SLC17A8Q8NDX2 589 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 RREB1Q92766 1687 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 CPS1P31327 1500 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 MAP2P11137 1827 aaKnown RBP3.8□□□□□ -1.8
CSMD3-202ENST00000339701 RAD50Q92878 1312 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 OPA1O60313 960 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 UBXN2AP68543 259 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 TMOD4Q9NZQ9 345 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 PARP4Q9UKK3 1724 aaKnown RBP3.8□□□□□ -1.8
CSMD3-202ENST00000339701 FAM98CQ17RN3 349 aaKnown RBP3.8□□□□□ -1.8
CSMD3-202ENST00000339701 ZSCAN25Q6NSZ9 544 aa3.8□□□□□ -1.8
CSMD3-202ENST00000339701 U3KPZ7 1027 aaPredicted RBP3.8□□□□□ -1.8
CSMD3-202ENST00000339701 SMTNL1A8MU46 457 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 KIF28PB7ZC32 967 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 TERF1P54274 439 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 SARNPP82979 210 aaKnown RBP3.79□□□□□ -1.8
CSMD3-202ENST00000339701 NBPF20Q3BBV1 942 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 AMOTQ4VCS5 1084 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 TPTE2Q6XPS3 522 aa3.79□□□□□ -1.8
CSMD3-202ENST00000339701 PRIMPOLQ96LW4 560 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 135.4 ms