RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 GCFC2P16383 781 aaKnown RBP11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 EIF2S2P20042 333 aaKnown RBP11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 PHF23Q9BUL5 403 aaPredicted RBP11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 NUCKS1Q9H1E3 243 aaKnown RBP11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 STAG3Q9UJ98 1225 aa11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 FAM169AQ9Y6X4 670 aa11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 PLCH2O75038 1416 aa11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 PPFIA4O75335 1185 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 IRX1P78414 480 aaPredicted RBP11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 INTS4Q96HW7 963 aaKnown RBP11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 TFIP11Q9UBB9 837 aaKnown RBP11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 CD109Q6YHK3 1445 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 DNMT1P26358 1616 aaKnown RBP11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 EFCAB8A8MWE9 144 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 RPS6KA5O75582 802 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 CLNS1AP54105 237 aaKnown RBP11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 CARD14Q9BXL6 1004 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 PARP3Q9Y6F1 533 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 SYCP2Q9BX26 1530 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 SCAF11Q99590 1463 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 LARGE1O95461 756 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 PYGLP06737 847 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 U2AF1L5P0DN76 240 aaPredicted RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 EIF5P55010 431 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 U2AF1Q01081 240 aaKnown RBP eCLIP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 ERC1Q8IUD2 1116 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 SAMM50Q9Y512 469 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 MAP3K4Q9Y6R4 1608 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 SYNMO15061 1565 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 ATP8B1O43520 1251 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 NR1I2O75469 434 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 TFRCP02786 760 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 RDXP35241 583 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 HNRNPMP52272 730 aaKnown RBP eCLIP11.19□□□□□ -0.622e-9■■■□□ 17.3
PTCHD4-201ENST00000339488 NAP1L1P55209 391 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 SETQ01105 290 aaPredicted RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 ARMCX5Q6P1M9 558 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 IPO7O95373 1038 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 ETF1P62495 437 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 ADCY2Q08462 1091 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 NAA25Q14CX7 972 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 CEP57Q86XR8 500 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 DDX54Q8TDD1 881 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 FANCAO15360 1455 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 IQSEC2Q5JU85 1478 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 RPSAP08865 295 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 USP8P40818 1118 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 PPP2R3AQ06190 1150 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 C1QTNF12Q5T7M4 302 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 TMC6Q7Z403 805 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 CADPS2Q86UW7 1296 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 CCDC26Q8TAB7 109 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 MICAL1Q8TDZ2 1067 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 RIN2Q8WYP3 895 aaPredicted RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 SETD1BQ9UPS6 1966 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 SOS1Q07889 1333 aaPredicted RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 LRRFIP1Q32MZ4 808 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 IQCA1Q86XH1 822 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 FMNL3Q8IVF7 1028 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 CCDC83Q8IWF9 413 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 PUF60Q9UHX1 559 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 NOS1P29475 1434 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 PPRC1Q5VV67 1664 aaKnown RBP11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 MAP2K7O14733 419 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 SSBP05455 408 aaKnown RBP eCLIP11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 INPP5BP32019 993 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 WDR24Q96S15 920 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 TRAK1Q9UPV9 953 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 SMC3Q9UQE7 1217 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 ANKRD33BA6NCL7 494 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 NEMFO60524 1076 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 KINO60870 393 aaKnown RBP11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 CDC25CP30307 473 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 TRIM65Q6PJ69 517 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 GPR161Q8N6U8 529 aaKnown RBP11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 PNKPQ96T60 521 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 BSDC1Q9NW68 430 aaPredicted RBP11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 PRDM15P57071 1507 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 CROCC2H7BZ55 1655 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 BECN2A8MW95 431 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 PPP1R12BO60237 982 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 CDC25BP30305 580 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 GRIK3Q13003 919 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 IQCB1Q15051 598 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 E2F5Q15329 346 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 VPS53Q5VIR6 699 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 NFXL1Q6ZNB6 911 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 TRIM74Q86UV6 250 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 TRIM73Q86UV7 250 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 CABS1Q96KC9 395 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 BAG1Q99933 345 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 IL25Q9H293 177 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 ABCB6Q9NP58 842 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 MTMR6Q9Y217 621 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 RGS12O14924 1447 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 GLI2P10070 1586 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 GOLGA6L4A6NEF3 574 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 GJB2P29033 226 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms