RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 GCFC2P16383 781 aaKnown RBP11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 EIF2S2P20042 333 aaKnown RBP11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 PHF23Q9BUL5 403 aaPredicted RBP11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 NUCKS1Q9H1E3 243 aaKnown RBP11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 STAG3Q9UJ98 1225 aa11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 FAM169AQ9Y6X4 670 aa11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 PLCH2O75038 1416 aa11.21□□□□□ -0.62
PTCHD4-201ENST00000339488 PPFIA4O75335 1185 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 IRX1P78414 480 aaPredicted RBP11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 INTS4Q96HW7 963 aaKnown RBP11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 TFIP11Q9UBB9 837 aaKnown RBP11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 CD109Q6YHK3 1445 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 DNMT1P26358 1616 aaKnown RBP11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 EFCAB8A8MWE9 144 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 RPS6KA5O75582 802 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 CLNS1AP54105 237 aaKnown RBP11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 CARD14Q9BXL6 1004 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 PARP3Q9Y6F1 533 aa11.2□□□□□ -0.62
PTCHD4-201ENST00000339488 SYCP2Q9BX26 1530 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 SCAF11Q99590 1463 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 LARGE1O95461 756 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 PYGLP06737 847 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 U2AF1L5P0DN76 240 aaPredicted RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 EIF5P55010 431 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 U2AF1Q01081 240 aaKnown RBP eCLIP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 ERC1Q8IUD2 1116 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 SAMM50Q9Y512 469 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 MAP3K4Q9Y6R4 1608 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 SYNMO15061 1565 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 ATP8B1O43520 1251 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 NR1I2O75469 434 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 TFRCP02786 760 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 RDXP35241 583 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 HNRNPMP52272 730 aaKnown RBP eCLIP11.19□□□□□ -0.622e-9■■■□□ 17.3
PTCHD4-201ENST00000339488 NAP1L1P55209 391 aaKnown RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 SETQ01105 290 aaPredicted RBP11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 ARMCX5Q6P1M9 558 aa11.19□□□□□ -0.62
PTCHD4-201ENST00000339488 IPO7O95373 1038 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 ETF1P62495 437 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 ADCY2Q08462 1091 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 NAA25Q14CX7 972 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 CEP57Q86XR8 500 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 DDX54Q8TDD1 881 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 FANCAO15360 1455 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 IQSEC2Q5JU85 1478 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 RPSAP08865 295 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 USP8P40818 1118 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 PPP2R3AQ06190 1150 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 C1QTNF12Q5T7M4 302 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 TMC6Q7Z403 805 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 CADPS2Q86UW7 1296 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 CCDC26Q8TAB7 109 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 MICAL1Q8TDZ2 1067 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 RIN2Q8WYP3 895 aaPredicted RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 SETD1BQ9UPS6 1966 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 SOS1Q07889 1333 aaPredicted RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 LRRFIP1Q32MZ4 808 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 IQCA1Q86XH1 822 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 FMNL3Q8IVF7 1028 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 CCDC83Q8IWF9 413 aa11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 PUF60Q9UHX1 559 aaKnown RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.18□□□□□ -0.62
PTCHD4-201ENST00000339488 NOS1P29475 1434 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 PPRC1Q5VV67 1664 aaKnown RBP11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 MAP2K7O14733 419 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 SSBP05455 408 aaKnown RBP eCLIP11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 INPP5BP32019 993 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 WDR24Q96S15 920 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 TRAK1Q9UPV9 953 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 SMC3Q9UQE7 1217 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 ANKRD33BA6NCL7 494 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 NEMFO60524 1076 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 KINO60870 393 aaKnown RBP11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 CDC25CP30307 473 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 TRIM65Q6PJ69 517 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 GPR161Q8N6U8 529 aaKnown RBP11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 PNKPQ96T60 521 aa11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 BSDC1Q9NW68 430 aaPredicted RBP11.17□□□□□ -0.62
PTCHD4-201ENST00000339488 PRDM15P57071 1507 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 CROCC2H7BZ55 1655 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 BECN2A8MW95 431 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 PPP1R12BO60237 982 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 CDC25BP30305 580 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 GRIK3Q13003 919 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 IQCB1Q15051 598 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 E2F5Q15329 346 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 VPS53Q5VIR6 699 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 NFXL1Q6ZNB6 911 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 TRIM74Q86UV6 250 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 TRIM73Q86UV7 250 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 CABS1Q96KC9 395 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 BAG1Q99933 345 aaPredicted RBP11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 IL25Q9H293 177 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 ABCB6Q9NP58 842 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 MTMR6Q9Y217 621 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 RGS12O14924 1447 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 GLI2P10070 1586 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 GOLGA6L4A6NEF3 574 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 GJB2P29033 226 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms