RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 TMX3Q96JJ7 454 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 EIF2AK4Q9P2K8 1649 aaKnown RBP11.76□□□□□ -0.53
CHD3-201ENST00000330494 TOP1P11387 765 aaKnown RBP11.76□□□□□ -0.53
CHD3-201ENST00000330494 RXRAP19793 462 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 WTAPQ15007 396 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 GIMAP6Q6P9H5 292 aa11.76□□□□□ -0.53
CHD3-201ENST00000330494 ZMYM3Q14202 1370 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 TFCP2Q12800 502 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 UTP14AQ9BVJ6 771 aaKnown RBP11.75□□□□□ -0.53
CHD3-201ENST00000330494 HOXC9P31274 260 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 HEATR3Q7Z4Q2 680 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 CNPY2Q9Y2B0 182 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 MAGEB6Q8N7X4 407 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 NLRP3Q96P20 1036 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 ESPNB1AK53 854 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 HLA-DOAP06340 250 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 MCM5P33992 734 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 CCDC24Q8N4L8 307 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 AFMP43652 599 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 FKBP15Q5T1M5 1219 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 PPP1R12BO60237 982 aaPredicted RBP11.75□□□□□ -0.53
CHD3-201ENST00000330494 CBX1P83916 185 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 TBC1D32Q96NH3 1257 aa11.75□□□□□ -0.53
CHD3-201ENST00000330494 NEBLO76041 1014 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 TCERG1LQ5VWI1 586 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 G2E3Q7L622 706 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 CABP5Q9NP86 173 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 SFPQP23246 707 aaKnown RBP eCLIP11.74□□□□□ -0.53
CHD3-201ENST00000330494 NAA16Q6N069 864 aaPredicted RBP11.74□□□□□ -0.53
CHD3-201ENST00000330494 TFCP2L1Q9NZI6 479 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 ZHX1Q9UKY1 873 aaPredicted RBP11.74□□□□□ -0.53
CHD3-201ENST00000330494 BAG4O95429 457 aaKnown RBP11.74□□□□□ -0.53
CHD3-201ENST00000330494 SPA17Q15506 151 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 TDRD12Q587J7 1177 aaKnown RBP11.74□□□□□ -0.53
CHD3-201ENST00000330494 TMC6Q7Z403 805 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 ESYT1Q9BSJ8 1104 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 KIF5BP33176 963 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 USP8P40818 1118 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 ATP8B2P98198 1209 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 PPP4R3AQ6IN85 833 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 TAF4BQ92750 862 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 ORAI2Q96SN7 254 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 PAG1Q9NWQ8 432 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 MAP3K5Q99683 1374 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 IRS4O14654 1257 aaPredicted RBP11.74□□□□□ -0.53
CHD3-201ENST00000330494 MCMDC2Q4G0Z9 681 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 ANKRD44Q8N8A2 993 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 LDHCP07864 332 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 MARCKSP29966 332 aaPredicted RBP11.74□□□□□ -0.53
CHD3-201ENST00000330494 CASQ1P31415 396 aa11.74□□□□□ -0.53
CHD3-201ENST00000330494 MTIF2P46199 727 aaKnown RBP11.74□□□□□ -0.53
CHD3-201ENST00000330494 CCDC102AQ96A19 550 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 ZKSCAN3Q9BRR0 538 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 VEZTQ9HBM0 779 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 PLEKHH1Q9ULM0 1364 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 UQCRFS1P1P0C7P4 283 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 ALG1Q9BT22 464 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 DTNBO60941 627 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 CALML4Q96GE6 196 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 RAB34Q9BZG1 259 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 NSFL1CQ9UNZ2 370 aaKnown RBP11.73□□□□□ -0.53
CHD3-201ENST00000330494 RNMTO43148 476 aaKnown RBP11.73□□□□□ -0.53
CHD3-201ENST00000330494 VAMP4O75379 141 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 URI1O94763 535 aaPredicted RBP11.73□□□□□ -0.53
CHD3-201ENST00000330494 MAP3K19Q56UN5 1328 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 ZBTB43O43298 467 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 HDAC1Q13547 482 aaPredicted RBP11.73□□□□□ -0.53
CHD3-201ENST00000330494 CCDC178Q5BJE1 867 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 TESK2Q96S53 571 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 FLT4P35916 1363 aa11.73□□□□□ -0.53
CHD3-201ENST00000330494 MACROD2A1Z1Q3 448 aa11.72□□□□□ -0.53
CHD3-201ENST00000330494 CEP85Q6P2H3 762 aa11.72□□□□□ -0.53
CHD3-201ENST00000330494 KLHDC4Q8TBB5 520 aa11.72□□□□□ -0.53
CHD3-201ENST00000330494 TCP11L1Q9NUJ3 509 aa11.72□□□□□ -0.53
CHD3-201ENST00000330494 MAGEB6P1A0A0J9YX57 407 aa11.72□□□□□ -0.53
CHD3-201ENST00000330494 PTPN14Q15678 1187 aa11.72□□□□□ -0.53
CHD3-201ENST00000330494 SYCP3Q8IZU3 236 aa11.72□□□□□ -0.53
CHD3-201ENST00000330494 RTCBQ9Y3I0 505 aaKnown RBP11.72□□□□□ -0.53
CHD3-201ENST00000330494 RBM25P49756 843 aaKnown RBP11.72□□□□□ -0.53
CHD3-201ENST00000330494 FAM89AQ96GI7 184 aa11.72□□□□□ -0.53
CHD3-201ENST00000330494 C16orf45Q96MC5 204 aaPredicted RBP11.72□□□□□ -0.53
CHD3-201ENST00000330494 MYO1BO43795 1136 aa11.72□□□□□ -0.53
CHD3-201ENST00000330494 CCDC148Q8NFR7 591 aa11.72□□□□□ -0.53
CHD3-201ENST00000330494 CTNNBL1Q8WYA6 563 aaPredicted RBP11.72□□□□□ -0.53
CHD3-201ENST00000330494 C19orf44Q9H6X5 657 aa11.72□□□□□ -0.53
CHD3-201ENST00000330494 LMTK3Q96Q04 1460 aa11.71□□□□□ -0.53
CHD3-201ENST00000330494 UBA7P41226 1012 aa11.71□□□□□ -0.53
CHD3-201ENST00000330494 RTN1Q16799 776 aa11.71□□□□□ -0.53
CHD3-201ENST00000330494 GPATCH11Q8N954 259 aa11.71□□□□□ -0.53
CHD3-201ENST00000330494 SAP30BPQ9UHR5 308 aaKnown RBP11.71□□□□□ -0.53
CHD3-201ENST00000330494 ADCY5O95622 1261 aa11.71□□□□□ -0.53
CHD3-201ENST00000330494 TXLNBQ8N3L3 684 aa11.71□□□□□ -0.53
CHD3-201ENST00000330494 ZNF830Q96NB3 372 aaPredicted RBP11.71□□□□□ -0.53
CHD3-201ENST00000330494 APOBRQ0VD83 1088 aa11.71□□□□□ -0.53
CHD3-201ENST00000330494 PLS1Q14651 629 aa11.71□□□□□ -0.53
CHD3-201ENST00000330494 TRERF1Q96PN7 1200 aa11.71□□□□□ -0.53
CHD3-201ENST00000330494 LGR6Q9HBX8 967 aa11.71□□□□□ -0.53
CHD3-201ENST00000330494 GOPCQ9HD26 462 aa11.71□□□□□ -0.53
CHD3-201ENST00000330494 CGNQ9P2M7 1197 aaKnown RBP11.71□□□□□ -0.53
CHD3-201ENST00000330494 KIAA0754O94854 1291 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms