RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 NEURL1BA8MQ27 555 aa20.7■□□□□ 0.9
PDLIM1-201ENST00000329399 MVPQ14764 893 aaKnown RBP20.7■□□□□ 0.9
PDLIM1-201ENST00000329399 CWC25Q9NXE8 425 aaPredicted RBP20.7■□□□□ 0.9
PDLIM1-201ENST00000329399 CACNA1FO60840 1977 aa20.7■□□□□ 0.9
PDLIM1-201ENST00000329399 SBF1O95248 1867 aa20.7■□□□□ 0.9
PDLIM1-201ENST00000329399 PTPRCP08575 1304 aa20.69■□□□□ 0.9
PDLIM1-201ENST00000329399 TRIM27P14373 513 aa20.69■□□□□ 0.9
PDLIM1-201ENST00000329399 ALDH1B1P30837 517 aa20.69■□□□□ 0.9
PDLIM1-201ENST00000329399 ZNF526Q8TF50 670 aaPredicted RBP20.69■□□□□ 0.9
PDLIM1-201ENST00000329399 DNAAF4Q8WXU2 420 aa20.69■□□□□ 0.9
PDLIM1-201ENST00000329399 CRAMP1Q96RY5 1269 aa20.69■□□□□ 0.9
PDLIM1-201ENST00000329399 RNF181Q9P0P0 153 aa20.69■□□□□ 0.9
PDLIM1-201ENST00000329399 COL4A1P02462 1669 aa20.69■□□□□ 0.9
PDLIM1-201ENST00000329399 ABCC4O15439 1325 aa20.69■□□□□ 0.9
PDLIM1-201ENST00000329399 PCCAP05165 728 aaPredicted RBP20.69■□□□□ 0.9
PDLIM1-201ENST00000329399 RBM17Q96I25 401 aaKnown RBP20.69■□□□□ 0.9
PDLIM1-201ENST00000329399 TAF1P21675 1872 aa20.68■□□□□ 0.9
PDLIM1-201ENST00000329399 CENPQQ7L2Z9 268 aaPredicted RBP20.68■□□□□ 0.9
PDLIM1-201ENST00000329399 PANK1Q8TE04 598 aa20.68■□□□□ 0.9
PDLIM1-201ENST00000329399 CLUAP1Q96AJ1 413 aa20.68■□□□□ 0.9
PDLIM1-201ENST00000329399 LAMB2P55268 1798 aa20.68■□□□□ 0.9
PDLIM1-201ENST00000329399 DDX60Q8IY21 1712 aaKnown RBP20.68■□□□□ 0.9
PDLIM1-201ENST00000329399 SF3B3Q15393 1217 aaKnown RBP20.67■□□□□ 0.9
PDLIM1-201ENST00000329399 COG6Q9Y2V7 657 aa20.67■□□□□ 0.9
PDLIM1-201ENST00000329399 SNED1Q8TER0 1413 aa20.67■□□□□ 0.9
PDLIM1-201ENST00000329399 FER1L6Q2WGJ9 1857 aa20.66■□□□□ 0.9
PDLIM1-201ENST00000329399 GCKRQ14397 625 aa20.66■□□□□ 0.9
PDLIM1-201ENST00000329399 BEND3Q5T5X7 828 aa20.66■□□□□ 0.9
PDLIM1-201ENST00000329399 H7C1W4 665 aa20.65■□□□□ 0.9
PDLIM1-201ENST00000329399 LMNB1P20700 586 aa20.65■□□□□ 0.9
PDLIM1-201ENST00000329399 NEXNQ0ZGT2 675 aa20.65■□□□□ 0.9
PDLIM1-201ENST00000329399 CELF1Q92879 486 aaKnown RBP20.65■□□□□ 0.9
PDLIM1-201ENST00000329399 CCDC85AQ96PX6 553 aaPredicted RBP20.65■□□□□ 0.9
PDLIM1-201ENST00000329399 SEC31BQ9NQW1 1179 aa20.65■□□□□ 0.9
PDLIM1-201ENST00000329399 CASP7P55210 303 aa20.64■□□□□ 0.89
PDLIM1-201ENST00000329399 CCDC93Q567U6 631 aa20.64■□□□□ 0.89
PDLIM1-201ENST00000329399 ZNF277Q9NRM2 450 aaPredicted RBP20.64■□□□□ 0.89
PDLIM1-201ENST00000329399 PPEF1O14829 653 aaPredicted RBP20.63■□□□□ 0.89
PDLIM1-201ENST00000329399 UBE3BQ7Z3V4 1068 aa20.63■□□□□ 0.89
PDLIM1-201ENST00000329399 LINS1Q8NG48 757 aa20.63■□□□□ 0.89
PDLIM1-201ENST00000329399 TAOK3Q9H2K8 898 aa20.63■□□□□ 0.89
PDLIM1-201ENST00000329399 CCDC88AQ3V6T2 1871 aa20.63■□□□□ 0.89
PDLIM1-201ENST00000329399 RLBP1P12271 317 aa20.62■□□□□ 0.89
PDLIM1-201ENST00000329399 DDX46Q7L014 1031 aaKnown RBP20.62■□□□□ 0.89
PDLIM1-201ENST00000329399 LTBP3Q9NS15 1303 aa20.62■□□□□ 0.89
PDLIM1-201ENST00000329399 PDE8AO60658 829 aa20.62■□□□□ 0.89
PDLIM1-201ENST00000329399 GRAPQ13588 217 aa20.62■□□□□ 0.89
PDLIM1-201ENST00000329399 SLC4A10Q6U841 1118 aa20.62■□□□□ 0.89
PDLIM1-201ENST00000329399 GRAPLQ8TC17 118 aaPredicted RBP20.62■□□□□ 0.89
PDLIM1-201ENST00000329399 ATP6V0A2Q9Y487 856 aa20.62■□□□□ 0.89
PDLIM1-201ENST00000329399 FKBP4Q02790 459 aaKnown RBP eCLIP20.61■□□□□ 0.89
PDLIM1-201ENST00000329399 SOGA3Q5TF21 947 aa20.61■□□□□ 0.89
PDLIM1-201ENST00000329399 CDHR2Q9BYE9 1310 aa20.6■□□□□ 0.89
PDLIM1-201ENST00000329399 BBOX1O75936 387 aa20.6■□□□□ 0.89
PDLIM1-201ENST00000329399 RTKN2Q8IZC4 609 aa20.6■□□□□ 0.89
PDLIM1-201ENST00000329399 TTLL11Q8NHH1 800 aa20.6■□□□□ 0.89
PDLIM1-201ENST00000329399 ITPRIPQ8IWB1 547 aa20.59■□□□□ 0.89
PDLIM1-201ENST00000329399 KDM2BQ8NHM5 1336 aa20.59■□□□□ 0.89
PDLIM1-201ENST00000329399 SP8Q8IXZ3 490 aa20.58■□□□□ 0.89
PDLIM1-201ENST00000329399 RWDD1Q9H446 243 aaPredicted RBP20.58■□□□□ 0.89
PDLIM1-201ENST00000329399 GPBP1L1Q9HC44 474 aaPredicted RBP20.58■□□□□ 0.89
PDLIM1-201ENST00000329399 NMRK2Q9NPI5 230 aa20.58■□□□□ 0.89
PDLIM1-201ENST00000329399 COL4A5P29400 1685 aa20.58■□□□□ 0.88
PDLIM1-201ENST00000329399 CTSWP56202 376 aa20.57■□□□□ 0.88
PDLIM1-201ENST00000329399 EPHA10Q5JZY3 1008 aa20.57■□□□□ 0.88
PDLIM1-201ENST00000329399 INTS3Q68E01 1043 aaKnown RBP20.57■□□□□ 0.88
PDLIM1-201ENST00000329399 TMEM57Q8N5G2 664 aa20.57■□□□□ 0.88
PDLIM1-201ENST00000329399 PSMD1Q99460 953 aa20.57■□□□□ 0.88
PDLIM1-201ENST00000329399 GREM2Q9H772 168 aa20.57■□□□□ 0.88
PDLIM1-201ENST00000329399 RPS8P62241 208 aaKnown RBP20.56■□□□□ 0.88
PDLIM1-201ENST00000329399 CC2D2BQ6DHV5 1058 aa20.56■□□□□ 0.88
PDLIM1-201ENST00000329399 ZBTB40Q9NUA8 1239 aa20.56■□□□□ 0.88
PDLIM1-201ENST00000329399 WTIPA6NIX2 430 aaPredicted RBP20.55■□□□□ 0.88
PDLIM1-201ENST00000329399 KIF3CO14782 793 aa20.55■□□□□ 0.88
PDLIM1-201ENST00000329399 IARSP41252 1262 aaKnown RBP20.55■□□□□ 0.88
PDLIM1-201ENST00000329399 FOXO4P98177 505 aa20.55■□□□□ 0.88
PDLIM1-201ENST00000329399 CCDC152Q4G0S7 254 aa20.55■□□□□ 0.88
PDLIM1-201ENST00000329399 PLA2G12BQ9BX93 195 aa20.55■□□□□ 0.88
PDLIM1-201ENST00000329399 SRCIN1Q9C0H9 1055 aa20.55■□□□□ 0.88
PDLIM1-201ENST00000329399 CSF1RP07333 972 aa20.54■□□□□ 0.88
PDLIM1-201ENST00000329399 NBPF7P0C2Y1 421 aaPredicted RBP20.54■□□□□ 0.88
PDLIM1-201ENST00000329399 CCT4P50991 539 aaKnown RBP20.54■□□□□ 0.88
PDLIM1-201ENST00000329399 GPSM2P81274 684 aa20.54■□□□□ 0.88
PDLIM1-201ENST00000329399 KAZALD1Q96I82 304 aa20.54■□□□□ 0.88
PDLIM1-201ENST00000329399 TNNQ9UQP3 1299 aa20.54■□□□□ 0.88
PDLIM1-201ENST00000329399 CEP350Q5VT06 3117 aa20.53■□□□□ 0.88
PDLIM1-201ENST00000329399 POTECB2RU33 542 aa20.53■□□□□ 0.88
PDLIM1-201ENST00000329399 GRM8O00222 908 aa20.53■□□□□ 0.88
PDLIM1-201ENST00000329399 HDAC1Q13547 482 aaPredicted RBP20.53■□□□□ 0.88
PDLIM1-201ENST00000329399 MPNDQ8N594 471 aa20.53■□□□□ 0.88
PDLIM1-201ENST00000329399 RTFDC1Q9BY42 306 aaPredicted RBP20.53■□□□□ 0.88
PDLIM1-201ENST00000329399 GLTPD2A6NH11 291 aa20.52■□□□□ 0.88
PDLIM1-201ENST00000329399 ZBTB7BO15156 539 aaPredicted RBP20.52■□□□□ 0.88
PDLIM1-201ENST00000329399 ALDH1L1O75891 902 aa20.52■□□□□ 0.88
PDLIM1-201ENST00000329399 FAM161AQ3B820 660 aa20.52■□□□□ 0.88
PDLIM1-201ENST00000329399 GPR101Q96P66 508 aaPredicted RBP20.52■□□□□ 0.88
PDLIM1-201ENST00000329399 RRAGCQ9HB90 399 aa20.52■□□□□ 0.88
PDLIM1-201ENST00000329399 POLLQ9UGP5 575 aa20.52■□□□□ 0.88
PDLIM1-201ENST00000329399 DICER1Q9UPY3 1922 aaKnown RBP20.52■□□□□ 0.88
PDLIM1-201ENST00000329399 DDNO94850 711 aaPredicted RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms