RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 LINS1Q8NG48 757 aa17.22■□□□□ 0.35
SSBP3-201ENST00000326956 SUCLG2Q96I99 432 aa17.22■□□□□ 0.35
SSBP3-201ENST00000326956 NBPF4Q96M43 638 aa17.22■□□□□ 0.35
SSBP3-201ENST00000326956 TBX22Q9Y458 520 aa17.22■□□□□ 0.35
SSBP3-201ENST00000326956 PIK3C2AO00443 1686 aa17.21■□□□□ 0.35
SSBP3-201ENST00000326956 CEBPZQ03701 1054 aaKnown RBP17.21■□□□□ 0.35
SSBP3-201ENST00000326956 IP6K1Q92551 441 aa17.21■□□□□ 0.35
SSBP3-201ENST00000326956 BRF1Q92994 677 aa17.21■□□□□ 0.35
SSBP3-201ENST00000326956 UBR1Q8IWV7 1749 aa17.21■□□□□ 0.35
SSBP3-201ENST00000326956 DDX11Q96FC9 970 aa17.21■□□□□ 0.35
SSBP3-201ENST00000326956 ALDH8A1Q9H2A2 487 aaPredicted RBP17.21■□□□□ 0.35
SSBP3-201ENST00000326956 ZSCAN16Q9H4T2 348 aaPredicted RBP17.2■□□□□ 0.34
SSBP3-201ENST00000326956 TLR7Q9NYK1 1049 aaKnown RBP17.2■□□□□ 0.34
SSBP3-201ENST00000326956 NWD1Q149M9 1564 aa17.2■□□□□ 0.34
SSBP3-201ENST00000326956 JAK2O60674 1132 aa17.2■□□□□ 0.34
SSBP3-201ENST00000326956 NCBP1Q09161 790 aaKnown RBP17.2■□□□□ 0.34
SSBP3-201ENST00000326956 COL9A3Q14050 684 aaPredicted RBP17.2■□□□□ 0.34
SSBP3-201ENST00000326956 PROSER3Q2NL68 480 aa17.2■□□□□ 0.34
SSBP3-201ENST00000326956 RBM43Q6ZSC3 357 aaKnown RBP17.2■□□□□ 0.34
SSBP3-201ENST00000326956 PGBD1Q96JS3 809 aa17.2■□□□□ 0.34
SSBP3-201ENST00000326956 NEK1Q96PY6 1258 aa17.2■□□□□ 0.34
SSBP3-201ENST00000326956 CACTINQ8WUQ7 758 aaKnown RBP17.2■□□□□ 0.34
SSBP3-201ENST00000326956 CGNQ9P2M7 1197 aaKnown RBP17.2■□□□□ 0.34
SSBP3-201ENST00000326956 DIP2AQ14689 1571 aa17.2■□□□□ 0.34
SSBP3-201ENST00000326956 CRYBG1Q9Y4K1 1723 aa17.2■□□□□ 0.34
SSBP3-201ENST00000326956 KIF20AO95235 890 aa17.19■□□□□ 0.34
SSBP3-201ENST00000326956 SYCP1Q15431 976 aa17.19■□□□□ 0.34
SSBP3-201ENST00000326956 RIC3Q7Z5B4 369 aa17.19■□□□□ 0.34
SSBP3-201ENST00000326956 ZNF589Q86UQ0 364 aaPredicted RBP17.19■□□□□ 0.34
SSBP3-201ENST00000326956 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.19■□□□□ 0.34
SSBP3-201ENST00000326956 CEP135Q66GS9 1140 aa17.19■□□□□ 0.34
SSBP3-201ENST00000326956 CCDC73Q6ZRK6 1079 aa17.19■□□□□ 0.34
SSBP3-201ENST00000326956 GTF3C6Q969F1 213 aa17.19■□□□□ 0.34
SSBP3-201ENST00000326956 OGFRQ9NZT2 677 aa17.19■□□□□ 0.34
SSBP3-201ENST00000326956 TAF6LQ9Y6J9 622 aa17.19■□□□□ 0.34
SSBP3-201ENST00000326956 CTAGE5O15320 804 aa17.18■□□□□ 0.34
SSBP3-201ENST00000326956 NEMFO60524 1076 aa17.18■□□□□ 0.34
SSBP3-201ENST00000326956 NEXNQ0ZGT2 675 aa17.18■□□□□ 0.34
SSBP3-201ENST00000326956 ADGRL3Q9HAR2 1447 aa17.18■□□□□ 0.34
SSBP3-201ENST00000326956 GIGYF1O75420 1035 aaPredicted RBP17.18■□□□□ 0.34
SSBP3-201ENST00000326956 STX1AQ16623 288 aa17.18■□□□□ 0.34
SSBP3-201ENST00000326956 SNRKQ9NRH2 765 aa17.18■□□□□ 0.34
SSBP3-201ENST00000326956 SETD1BQ9UPS6 1966 aaKnown RBP17.18■□□□□ 0.34
SSBP3-201ENST00000326956 TAF5LO75529 589 aa17.17■□□□□ 0.34
SSBP3-201ENST00000326956 FOSBP53539 338 aa17.17■□□□□ 0.34
SSBP3-201ENST00000326956 Q6ZUG5 572 aa17.17■□□□□ 0.34
SSBP3-201ENST00000326956 RGPD8O14715 1765 aaPredicted RBP17.17■□□□□ 0.34
SSBP3-201ENST00000326956 RNMTO43148 476 aaKnown RBP17.17■□□□□ 0.34
SSBP3-201ENST00000326956 CDC25BP30305 580 aa17.17■□□□□ 0.34
SSBP3-201ENST00000326956 RESTQ13127 1097 aa17.17■□□□□ 0.34
SSBP3-201ENST00000326956 AMOTQ4VCS5 1084 aa17.17■□□□□ 0.34
SSBP3-201ENST00000326956 MED23Q9ULK4 1368 aa17.17■□□□□ 0.34
SSBP3-201ENST00000326956 KINO60870 393 aaKnown RBP17.17■□□□□ 0.34
SSBP3-201ENST00000326956 CEBPAP49715 358 aaPredicted RBP17.17■□□□□ 0.34
SSBP3-201ENST00000326956 PTPN14Q15678 1187 aa17.17■□□□□ 0.34
SSBP3-201ENST00000326956 TSGA10IPQ3SY00 556 aa17.17■□□□□ 0.34
SSBP3-201ENST00000326956 BCL11BQ9C0K0 894 aaPredicted RBP17.17■□□□□ 0.34
SSBP3-201ENST00000326956 NAP1L2Q9ULW6 460 aaPredicted RBP17.17■□□□□ 0.34
SSBP3-201ENST00000326956 FILIP1Q7Z7B0 1213 aa17.16■□□□□ 0.34
SSBP3-201ENST00000326956 CCAR1Q8IX12 1150 aaKnown RBP17.16■□□□□ 0.34
SSBP3-201ENST00000326956 KLHDC4Q8TBB5 520 aa17.16■□□□□ 0.34
SSBP3-201ENST00000326956 LRRC59Q96AG4 307 aaKnown RBP17.16■□□□□ 0.34
SSBP3-201ENST00000326956 EDC3Q96F86 508 aaKnown RBP17.16■□□□□ 0.34
SSBP3-201ENST00000326956 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.16■□□□□ 0.34
SSBP3-201ENST00000326956 U3KPZ7 1027 aaPredicted RBP17.16■□□□□ 0.34
SSBP3-201ENST00000326956 NPHP4O75161 1426 aaPredicted RBP17.16■□□□□ 0.34
SSBP3-201ENST00000326956 CHD2O14647 1828 aaKnown RBP17.16■□□□□ 0.34
SSBP3-201ENST00000326956 ZRSR1Q15695 479 aaKnown RBP17.16■□□□□ 0.34
SSBP3-201ENST00000326956 CCDC144BQ3MJ40 725 aa17.16■□□□□ 0.34
SSBP3-201ENST00000326956 ZNF771Q7L3S4 317 aaPredicted RBP17.16■□□□□ 0.34
SSBP3-201ENST00000326956 CCDC144CPQ8IYA2 1237 aa17.16■□□□□ 0.34
SSBP3-201ENST00000326956 LRRC8AQ8IWT6 810 aa17.15■□□□□ 0.34
SSBP3-201ENST00000326956 DNAJC2Q99543 621 aaKnown RBP17.15■□□□□ 0.34
SSBP3-201ENST00000326956 ANKARQ7Z5J8 1434 aa17.15■□□□□ 0.34
SSBP3-201ENST00000326956 SKILP12757 684 aa17.14■□□□□ 0.33
SSBP3-201ENST00000326956 MRFAP1L1Q96HT8 127 aa17.14■□□□□ 0.33
SSBP3-201ENST00000326956 PHF8Q9UPP1 1060 aa17.14■□□□□ 0.33
SSBP3-201ENST00000326956 KAZALD1Q96I82 304 aa17.14■□□□□ 0.33
SSBP3-201ENST00000326956 ZNF396Q96N95 335 aaPredicted RBP17.14■□□□□ 0.33
SSBP3-201ENST00000326956 LRRC2Q9BYS8 371 aa17.14■□□□□ 0.33
SSBP3-201ENST00000326956 ANO10Q9NW15 660 aa17.14■□□□□ 0.33
SSBP3-201ENST00000326956 PRAMEF22A3QJZ6 481 aa17.14■□□□□ 0.33
SSBP3-201ENST00000326956 IGSF3O75054 1194 aa17.14■□□□□ 0.33
SSBP3-201ENST00000326956 SARM1Q6SZW1 724 aa17.14■□□□□ 0.33
SSBP3-201ENST00000326956 DDX21Q9NR30 783 aaKnown RBP eCLIP17.14■□□□□ 0.33
SSBP3-201ENST00000326956 C11orf57Q6ZUT1 292 aaPredicted RBP17.13■□□□□ 0.33
SSBP3-201ENST00000326956 CTNNA3Q9UI47 895 aa17.13■□□□□ 0.33
SSBP3-201ENST00000326956 NAA30Q147X3 362 aaPredicted RBP17.13■□□□□ 0.33
SSBP3-201ENST00000326956 IQCB1Q15051 598 aa17.13■□□□□ 0.33
SSBP3-201ENST00000326956 CEP57L1Q8IYX8 460 aa17.13■□□□□ 0.33
SSBP3-201ENST00000326956 KCNH5Q8NCM2 988 aa17.13■□□□□ 0.33
SSBP3-201ENST00000326956 NAT10Q9H0A0 1025 aaKnown RBP17.13■□□□□ 0.33
SSBP3-201ENST00000326956 ME1P48163 572 aa17.12■□□□□ 0.33
SSBP3-201ENST00000326956 PSME1Q06323 249 aa17.12■□□□□ 0.33
SSBP3-201ENST00000326956 USPL1Q5W0Q7 1092 aa17.12■□□□□ 0.33
SSBP3-201ENST00000326956 FBXW7Q969H0 707 aa17.12■□□□□ 0.33
SSBP3-201ENST00000326956 CCDC69A6NI79 296 aa17.12■□□□□ 0.33
SSBP3-201ENST00000326956 KCNA6P17658 529 aa17.12■□□□□ 0.33
SSBP3-201ENST00000326956 ATP5JP18859 108 aa17.12■□□□□ 0.33
SSBP3-201ENST00000326956 CCDC129Q6ZRS4 1044 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms