RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 COL23A1Q86Y22 540 aaPredicted RBP12.39□□□□□ -0.43
HMGB3-201ENST00000325307 UBR3Q6ZT12 1888 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 NFIXQ14938 502 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 FAM161AQ3B820 660 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 ERFEQ4G0M1 354 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 TPTE2Q6XPS3 522 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 PLA2G12BQ9BX93 195 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 SCN7AQ01118 1682 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 RAB11FIP3O75154 756 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 CCDC125Q86Z20 511 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 IL1RAPL2Q9NP60 686 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 IFIT5Q13325 482 aaKnown RBP12.38□□□□□ -0.43
HMGB3-201ENST00000325307 SLC15A2Q16348 729 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 CCDC24Q8N4L8 307 aa12.38□□□□□ -0.43
HMGB3-201ENST00000325307 C4AP0C0L4 1744 aa12.37□□□□□ -0.43
HMGB3-201ENST00000325307 ERC1Q8IUD2 1116 aa12.37□□□□□ -0.43
HMGB3-201ENST00000325307 TTLL11Q8NHH1 800 aa12.37□□□□□ -0.43
HMGB3-201ENST00000325307 RHPN1Q8TCX5 695 aa12.37□□□□□ -0.43
HMGB3-201ENST00000325307 KIF1BPQ96EK5 621 aa12.37□□□□□ -0.43
HMGB3-201ENST00000325307 CARMIL3Q8ND23 1372 aa12.37□□□□□ -0.43
HMGB3-201ENST00000325307 PNPLA7Q6ZV29 1317 aa12.37□□□□□ -0.43
HMGB3-201ENST00000325307 ZNF594Q96JF6 807 aaPredicted RBP12.36□□□□□ -0.43
HMGB3-201ENST00000325307 GREM2Q9H772 168 aa12.36□□□□□ -0.43
HMGB3-201ENST00000325307 NOP58Q9Y2X3 529 aaKnown RBP12.36□□□□□ -0.43
HMGB3-201ENST00000325307 PTPN12Q05209 780 aaKnown RBP12.36□□□□□ -0.43
HMGB3-201ENST00000325307 C16orf71Q8IYS4 520 aaPredicted RBP12.36□□□□□ -0.43
HMGB3-201ENST00000325307 RGPD3A6NKT7 1758 aaPredicted RBP12.36□□□□□ -0.43
HMGB3-201ENST00000325307 RGPD4Q7Z3J3 1758 aa12.36□□□□□ -0.43
HMGB3-201ENST00000325307 ITGA6P23229 1130 aa12.36□□□□□ -0.43
HMGB3-201ENST00000325307 RFX5P48382 616 aaPredicted RBP12.36□□□□□ -0.43
HMGB3-201ENST00000325307 CNBD1Q8NA66 436 aa12.36□□□□□ -0.43
HMGB3-201ENST00000325307 COPRSQ9NQ92 184 aa12.36□□□□□ -0.43
HMGB3-201ENST00000325307 ANKRD18BA2A2Z9 1011 aa12.35□□□□□ -0.43
HMGB3-201ENST00000325307 CSF1RP07333 972 aa12.35□□□□□ -0.43
HMGB3-201ENST00000325307 CCDC152Q4G0S7 254 aa12.35□□□□□ -0.43
HMGB3-201ENST00000325307 MSL1Q68DK7 614 aa12.35□□□□□ -0.43
HMGB3-201ENST00000325307 NLGN1Q8N2Q7 840 aa12.35□□□□□ -0.43
HMGB3-201ENST00000325307 C8orf34Q49A92 452 aa12.34□□□□□ -0.43
HMGB3-201ENST00000325307 CLASRPQ8N2M8 674 aaKnown RBP12.34□□□□□ -0.43
HMGB3-201ENST00000325307 SERPINB2P05120 415 aa12.34□□□□□ -0.43
HMGB3-201ENST00000325307 OTUD7AQ8TE49 926 aaPredicted RBP12.34□□□□□ -0.43
HMGB3-201ENST00000325307 NLRP3Q96P20 1036 aa12.34□□□□□ -0.43
HMGB3-201ENST00000325307 ABCC12Q96J65 1359 aa12.34□□□□□ -0.43
HMGB3-201ENST00000325307 ST5P78524 1137 aa12.33□□□□□ -0.44
HMGB3-201ENST00000325307 FGD1P98174 961 aa12.33□□□□□ -0.44
HMGB3-201ENST00000325307 LDHAL6AQ6ZMR3 332 aa12.33□□□□□ -0.44
HMGB3-201ENST00000325307 CNNM1Q9NRU3 951 aa12.33□□□□□ -0.44
HMGB3-201ENST00000325307 EYA2O00167 538 aa12.33□□□□□ -0.44
HMGB3-201ENST00000325307 SASH1O94885 1247 aa12.33□□□□□ -0.44
HMGB3-201ENST00000325307 TM4SF1P30408 202 aa12.33□□□□□ -0.44
HMGB3-201ENST00000325307 LRRC24Q50LG9 513 aa12.33□□□□□ -0.44
HMGB3-201ENST00000325307 IFIT2P09913 472 aaKnown RBP12.32□□□□□ -0.44
HMGB3-201ENST00000325307 DDR1Q08345 913 aa12.32□□□□□ -0.44
HMGB3-201ENST00000325307 C3orf67Q6ZVT6 689 aa12.32□□□□□ -0.44
HMGB3-201ENST00000325307 AACSQ86V21 672 aa12.32□□□□□ -0.44
HMGB3-201ENST00000325307 PUS3Q9BZE2 481 aaKnown RBP12.32□□□□□ -0.44
HMGB3-201ENST00000325307 SEC31BQ9NQW1 1179 aa12.32□□□□□ -0.44
HMGB3-201ENST00000325307 MMP10P09238 476 aa12.32□□□□□ -0.44
HMGB3-201ENST00000325307 IL15P40933 162 aaPredicted RBP12.32□□□□□ -0.44
HMGB3-201ENST00000325307 TFCP2Q12800 502 aa12.32□□□□□ -0.44
HMGB3-201ENST00000325307 PRR5LQ6MZQ0 368 aa12.32□□□□□ -0.44
HMGB3-201ENST00000325307 PLEKHM2Q8IWE5 1019 aa12.32□□□□□ -0.44
HMGB3-201ENST00000325307 MPHOSPH8Q99549 860 aa12.32□□□□□ -0.44
HMGB3-201ENST00000325307 SLC10A5Q5PT55 438 aa12.31□□□□□ -0.44
HMGB3-201ENST00000325307 PARP3Q9Y6F1 533 aa12.31□□□□□ -0.44
HMGB3-201ENST00000325307 POLRMTO00411 1230 aaKnown RBP12.31□□□□□ -0.44
HMGB3-201ENST00000325307 MX1P20591 662 aa12.31□□□□□ -0.44
HMGB3-201ENST00000325307 IGHMBP2P38935 993 aaKnown RBP12.31□□□□□ -0.44
HMGB3-201ENST00000325307 TSHZ3Q63HK5 1081 aa12.31□□□□□ -0.44
HMGB3-201ENST00000325307 UPF1Q92900 1129 aaKnown RBP eCLIP12.31□□□□□ -0.442e-6■■□□□ 14.2
HMGB3-201ENST00000325307 CDC5LQ99459 802 aaKnown RBP12.31□□□□□ -0.44
HMGB3-201ENST00000325307 CEP126Q9P2H0 1117 aa12.31□□□□□ -0.44
HMGB3-201ENST00000325307 ATG9AQ7Z3C6 839 aa12.3□□□□□ -0.44
HMGB3-201ENST00000325307 TUBGCP6Q96RT7 1819 aa12.3□□□□□ -0.44
HMGB3-201ENST00000325307 CIAO1O76071 339 aa12.3□□□□□ -0.44
HMGB3-201ENST00000325307 SF3B3Q15393 1217 aaKnown RBP12.3□□□□□ -0.44
HMGB3-201ENST00000325307 METTL24Q5JXM2 366 aa12.3□□□□□ -0.44
HMGB3-201ENST00000325307 CCDC8Q9H0W5 538 aaPredicted RBP12.3□□□□□ -0.44
HMGB3-201ENST00000325307 MYH3P11055 1940 aa12.3□□□□□ -0.44
HMGB3-201ENST00000325307 PDE1AP54750 535 aa12.29□□□□□ -0.44
HMGB3-201ENST00000325307 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.29□□□□□ -0.44
HMGB3-201ENST00000325307 DDX46Q7L014 1031 aaKnown RBP12.29□□□□□ -0.44
HMGB3-201ENST00000325307 ANKRD18AQ8IVF6 992 aa12.29□□□□□ -0.44
HMGB3-201ENST00000325307 GPATCH3Q96I76 525 aa12.29□□□□□ -0.44
HMGB3-201ENST00000325307 NEUROD6Q96NK8 337 aa12.29□□□□□ -0.44
HMGB3-201ENST00000325307 IPO9Q96P70 1041 aaKnown RBP12.29□□□□□ -0.44
HMGB3-201ENST00000325307 PDGFDQ9GZP0 370 aaPredicted RBP12.29□□□□□ -0.44
HMGB3-201ENST00000325307 FBXO3Q9UK99 471 aa12.29□□□□□ -0.44
HMGB3-201ENST00000325307 COL24A1Q17RW2 1714 aa12.29□□□□□ -0.44
HMGB3-201ENST00000325307 RPGRQ92834 1020 aaKnown RBP12.29□□□□□ -0.44
HMGB3-201ENST00000325307 EAF2Q96CJ1 260 aaPredicted RBP12.29□□□□□ -0.44
HMGB3-201ENST00000325307 TNNI3KQ59H18 835 aa12.28□□□□□ -0.44
HMGB3-201ENST00000325307 FPGT-TNNI3KV9GXZ4 949 aa12.28□□□□□ -0.44
HMGB3-201ENST00000325307 DDX60Q8IY21 1712 aaKnown RBP12.28□□□□□ -0.44
HMGB3-201ENST00000325307 RTL9Q8NET4 1388 aa12.27□□□□□ -0.44
HMGB3-201ENST00000325307 TTC22Q5TAA0 569 aa12.27□□□□□ -0.44
HMGB3-201ENST00000325307 HELBQ8NG08 1087 aaPredicted RBP12.27□□□□□ -0.44
HMGB3-201ENST00000325307 ANP32AP39687 249 aaKnown RBP12.27□□□□□ -0.45
HMGB3-201ENST00000325307 TLR7Q9NYK1 1049 aaKnown RBP12.27□□□□□ -0.45
HMGB3-201ENST00000325307 RIPOR2Q9Y4F9 1068 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms