RNA–Protein interactions for RNA: ENST00000324771.12

DDR1-223, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 5 BASIC

Gene DDR1, Length 4,148 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-223	ENST00000324771	ALK	Q9UM73	1620 aa		13.9	□□□□□ -0.18
DDR1-223	ENST00000324771	ATP7B	P35670	1465 aa		13.9	□□□□□ -0.18
DDR1-223	ENST00000324771	NEURL1B	A8MQ27	555 aa		13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	RAB3GAP1	Q15042	981 aa		13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	NCBP3	Q53F19	620 aa	Known RBP	13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	SSH3	Q8TE77	659 aa		13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	RBM10	P98175	930 aa	Known RBP	13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	APOBR	Q0VD83	1088 aa		13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	TLR7	Q9NYK1	1049 aa	Known RBP	13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	ORC3	Q9UBD5	711 aa	Predicted RBP	13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	KLF18	A0A0U1RQI7	1052 aa		13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	TTLL5	Q6EMB2	1281 aa		13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	PLBD2	Q8NHP8	589 aa		13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	PCDH11X	Q9BZA7	1347 aa		13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	PCDH11Y	Q9BZA8	1340 aa		13.89	□□□□□ -0.19
DDR1-223	ENST00000324771	TULP4	Q9NRJ4	1543 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	SGSM2	O43147	1006 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	XBP1	P17861	261 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	ZSCAN23	Q3MJ62	389 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	TNNI3K	Q59H18	835 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	FPGT-TNNI3K	V9GXZ4	949 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	FAM98C	Q17RN3	349 aa	Known RBP	13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	CFAP45	Q9UL16	551 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	C6orf229	H3BNL8	230 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	KLHL40	Q2TBA0	621 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	ZSCAN22	P10073	491 aa	Predicted RBP	13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	PTH1R	Q03431	593 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	MAP3K11	Q16584	847 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	SNX14	Q9Y5W7	946 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	CCDC171	Q6TFL3	1326 aa		13.88	□□□□□ -0.19
DDR1-223	ENST00000324771	ERBB3	P21860	1342 aa		13.87	□□□□□ -0.19
DDR1-223	ENST00000324771	TTC41P	Q6P2S7	1318 aa		13.87	□□□□□ -0.19
DDR1-223	ENST00000324771	CCDC39	Q9UFE4	941 aa		13.87	□□□□□ -0.19
DDR1-223	ENST00000324771	ZNF830	Q96NB3	372 aa	Predicted RBP	13.87	□□□□□ -0.19
DDR1-223	ENST00000324771	ADGRB3	O60242	1522 aa		13.87	□□□□□ -0.19
DDR1-223	ENST00000324771	HOXB7	P09629	217 aa		13.87	□□□□□ -0.19
DDR1-223	ENST00000324771	SYT1	P21579	422 aa		13.87	□□□□□ -0.19
DDR1-223	ENST00000324771	USP5	P45974	858 aa		13.87	□□□□□ -0.19
DDR1-223	ENST00000324771	NCOA5	Q9HCD5	579 aa	Known RBP	13.87	□□□□□ -0.19
DDR1-223	ENST00000324771	EYA2	O00167	538 aa		13.86	□□□□□ -0.19
DDR1-223	ENST00000324771	DZIP1	Q86YF9	867 aa	Known RBP	13.86	□□□□□ -0.19
DDR1-223	ENST00000324771	ITGA6	P23229	1130 aa		13.86	□□□□□ -0.19
DDR1-223	ENST00000324771	LRRC24	Q50LG9	513 aa		13.86	□□□□□ -0.19
DDR1-223	ENST00000324771	TMEM67	Q5HYA8	995 aa		13.86	□□□□□ -0.19
DDR1-223	ENST00000324771	BRMS1	Q9HCU9	246 aa		13.86	□□□□□ -0.19
DDR1-223	ENST00000324771	LMTK3	Q96Q04	1460 aa		13.86	□□□□□ -0.19
DDR1-223	ENST00000324771	ANAPC15	P60006	121 aa		13.86	□□□□□ -0.19
DDR1-223	ENST00000324771	ZKSCAN3	Q9BRR0	538 aa		13.86	□□□□□ -0.19
DDR1-223	ENST00000324771	PUS3	Q9BZE2	481 aa	Known RBP	13.86	□□□□□ -0.19
DDR1-223	ENST00000324771	SLC12A7	Q9Y666	1083 aa		13.86	□□□□□ -0.19
DDR1-223	ENST00000324771	GOLGA8A	A7E2F4	631 aa		13.85	□□□□□ -0.19
DDR1-223	ENST00000324771	SLC3A2	P08195	630 aa	Known RBP	13.85	□□□□□ -0.19
DDR1-223	ENST00000324771	CYP7A1	P22680	504 aa		13.85	□□□□□ -0.19
DDR1-223	ENST00000324771	RFC4	P35249	363 aa		13.85	□□□□□ -0.19
DDR1-223	ENST00000324771	OTUD7B	Q6GQQ9	843 aa		13.85	□□□□□ -0.19
DDR1-223	ENST00000324771	OLFM4	Q6UX06	510 aa		13.85	□□□□□ -0.19
DDR1-223	ENST00000324771	FAM177A1	Q8N128	213 aa	Predicted RBP	13.85	□□□□□ -0.19
DDR1-223	ENST00000324771		A0A0D9SFI3	127 aa		13.85	□□□□□ -0.19
DDR1-223	ENST00000324771	RASEF	Q8IZ41	740 aa		13.85	□□□□□ -0.19
DDR1-223	ENST00000324771	KIDINS220	Q9ULH0	1771 aa		13.85	□□□□□ -0.19
DDR1-223	ENST00000324771		F8W031	263 aa	Predicted RBP	13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	TOM1	O60784	492 aa		13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	MKNK2	Q9HBH9	465 aa		13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	BABAM1	Q9NWV8	329 aa		13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	DHX8	Q14562	1220 aa	Known RBP	13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	FSIP1	Q8NA03	581 aa		13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	CDC5L	Q99459	802 aa	Known RBP	13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	CYP27B1	O15528	508 aa		13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	LETM1	O95202	739 aa	Predicted RBP	13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	CCDC183	Q5T5S1	534 aa		13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	SLC26A6	Q9BXS9	759 aa		13.84	□□□□□ -0.19
DDR1-223	ENST00000324771	HSP90AA4P	Q58FG1	418 aa		13.83	□□□□□ -0.19
DDR1-223	ENST00000324771	AK7	Q96M32	723 aa		13.83	□□□□□ -0.19
DDR1-223	ENST00000324771	HOOK1	Q9UJC3	728 aa	Known RBP	13.83	□□□□□ -0.19
DDR1-223	ENST00000324771	NPHP4	O75161	1426 aa	Predicted RBP	13.83	□□□□□ -0.19
DDR1-223	ENST00000324771	CCDC152	Q4G0S7	254 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	XAGE2	Q96GT9	111 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	NAT10	Q9H0A0	1025 aa	Known RBP	13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	VAT1L	Q9HCJ6	419 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	SERPINC1	P01008	464 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	SLFNL1	Q499Z3	407 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	KLHL10	Q6JEL2	608 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	MAGEB6	Q8N7X4	407 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	NCOA7	Q8NI08	942 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	SETDB2	Q96T68	719 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	UTP14A	Q9BVJ6	771 aa	Known RBP	13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	SLC27A2	O14975	620 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	F13A1	P00488	732 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	ANKRD18A	Q8IVF6	992 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	SLC4A4	Q9Y6R1	1079 aa		13.83	□□□□□ -0.2
DDR1-223	ENST00000324771	RNF113A	O15541	343 aa	Known RBP	13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	PRC1	O43663	620 aa		13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	HMGB1	P09429	215 aa	Known RBP	13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	MARCKS	P29966	332 aa	Predicted RBP	13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.82	□□□□□ -0.2

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