RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 TTLL11Q8NHH1 800 aa19.18■□□□□ 0.66
PDLIM5-202ENST00000318007 SEC31BQ9NQW1 1179 aa19.17■□□□□ 0.66
PDLIM5-202ENST00000318007 PPP1R1BQ9UD71 204 aaPredicted RBP19.17■□□□□ 0.66
PDLIM5-202ENST00000318007 HDAC5Q9UQL6 1122 aa19.17■□□□□ 0.66
PDLIM5-202ENST00000318007 HMMRO75330 724 aa19.16■□□□□ 0.66
PDLIM5-202ENST00000318007 ITGA6P23229 1130 aa19.16■□□□□ 0.66
PDLIM5-202ENST00000318007 RABL6Q3YEC7 729 aaPredicted RBP19.16■□□□□ 0.66
PDLIM5-202ENST00000318007 NLRP3Q96P20 1036 aa19.16■□□□□ 0.66
PDLIM5-202ENST00000318007 CASZ1Q86V15 1759 aa19.16■□□□□ 0.66
PDLIM5-202ENST00000318007 MYH3P11055 1940 aa19.16■□□□□ 0.66
PDLIM5-202ENST00000318007 SURF6O75683 361 aaKnown RBP19.15■□□□□ 0.66
PDLIM5-202ENST00000318007 CCDC57Q2TAC2 916 aa19.15■□□□□ 0.66
PDLIM5-202ENST00000318007 WWC3Q9ULE0 1092 aa19.15■□□□□ 0.66
PDLIM5-202ENST00000318007 IBTKQ9P2D0 1353 aaPredicted RBP19.15■□□□□ 0.66
PDLIM5-202ENST00000318007 OS9Q13438 667 aaPredicted RBP19.15■□□□□ 0.66
PDLIM5-202ENST00000318007 HDAC1Q13547 482 aaPredicted RBP19.15■□□□□ 0.66
PDLIM5-202ENST00000318007 TAF7LQ5H9L4 462 aa19.15■□□□□ 0.66
PDLIM5-202ENST00000318007 TAF1P21675 1872 aa19.14■□□□□ 0.66
PDLIM5-202ENST00000318007 IFIT5Q13325 482 aaKnown RBP19.14■□□□□ 0.65
PDLIM5-202ENST00000318007 SSH3Q8TE77 659 aa19.14■□□□□ 0.65
PDLIM5-202ENST00000318007 PLA2G12BQ9BX93 195 aa19.14■□□□□ 0.65
PDLIM5-202ENST00000318007 MTFR1LQ9H019 292 aa19.14■□□□□ 0.65
PDLIM5-202ENST00000318007 COL4A1P02462 1669 aa19.14■□□□□ 0.65
PDLIM5-202ENST00000318007 MTX1Q13505 466 aa19.13■□□□□ 0.65
PDLIM5-202ENST00000318007 POLA2Q14181 598 aa19.13■□□□□ 0.65
PDLIM5-202ENST00000318007 CCDC152Q4G0S7 254 aa19.13■□□□□ 0.65
PDLIM5-202ENST00000318007 SLC51AQ86UW1 340 aa19.13■□□□□ 0.65
PDLIM5-202ENST00000318007 SLC16A10Q8TF71 515 aa19.13■□□□□ 0.65
PDLIM5-202ENST00000318007 KDM2BQ8NHM5 1336 aa19.13■□□□□ 0.65
PDLIM5-202ENST00000318007 LAMB2P55268 1798 aa19.13■□□□□ 0.65
PDLIM5-202ENST00000318007 SMARCA5O60264 1052 aaPredicted RBP19.13■□□□□ 0.65
PDLIM5-202ENST00000318007 CSF1RP07333 972 aa19.13■□□□□ 0.65
PDLIM5-202ENST00000318007 PTPN12Q05209 780 aaKnown RBP19.12■□□□□ 0.65
PDLIM5-202ENST00000318007 PUS3Q9BZE2 481 aaKnown RBP19.12■□□□□ 0.65
PDLIM5-202ENST00000318007 RFX5P48382 616 aaPredicted RBP19.12■□□□□ 0.65
PDLIM5-202ENST00000318007 ANKRD45Q5TZF3 282 aa19.12■□□□□ 0.65
PDLIM5-202ENST00000318007 ANKRD18BA2A2Z9 1011 aa19.11■□□□□ 0.65
PDLIM5-202ENST00000318007 POLD1P28340 1107 aa19.11■□□□□ 0.65
PDLIM5-202ENST00000318007 LRRC24Q50LG9 513 aa19.11■□□□□ 0.65
PDLIM5-202ENST00000318007 SLC10A5Q5PT55 438 aa19.11■□□□□ 0.65
PDLIM5-202ENST00000318007 CENPQQ7L2Z9 268 aaPredicted RBP19.11■□□□□ 0.65
PDLIM5-202ENST00000318007 SPEF2Q9C093 1822 aa19.11■□□□□ 0.65
PDLIM5-202ENST00000318007 CHRNA5P30532 468 aa19.1■□□□□ 0.65
PDLIM5-202ENST00000318007 RPGRQ92834 1020 aaKnown RBP19.1■□□□□ 0.65
PDLIM5-202ENST00000318007 CELF1Q92879 486 aaKnown RBP19.1■□□□□ 0.65
PDLIM5-202ENST00000318007 IL1RAPL2Q9NP60 686 aa19.1■□□□□ 0.65
PDLIM5-202ENST00000318007 HSP90B1P14625 803 aaKnown RBP19.1■□□□□ 0.65
PDLIM5-202ENST00000318007 ANKRD31Q8N7Z5 1873 aa19.1■□□□□ 0.65
PDLIM5-202ENST00000318007 LNPKQ9C0E8 428 aa19.1■□□□□ 0.65
PDLIM5-202ENST00000318007 DCTPP1Q9H773 170 aa19.1■□□□□ 0.65
PDLIM5-202ENST00000318007 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.1■□□□□ 0.65
PDLIM5-202ENST00000318007 NRXN2Q9P2S2 1712 aa19.09■□□□□ 0.65
PDLIM5-202ENST00000318007 LDHAL6AQ6ZMR3 332 aa19.08■□□□□ 0.65
PDLIM5-202ENST00000318007 CNNM1Q9NRU3 951 aa19.08■□□□□ 0.65
PDLIM5-202ENST00000318007 G3BP1Q13283 466 aaKnown RBP eCLIP19.08■□□□□ 0.64
PDLIM5-202ENST00000318007 SF3B3Q15393 1217 aaKnown RBP19.08■□□□□ 0.64
PDLIM5-202ENST00000318007 DDX46Q7L014 1031 aaKnown RBP19.08■□□□□ 0.64
PDLIM5-202ENST00000318007 BRIP1Q9BX63 1249 aa19.08■□□□□ 0.64
PDLIM5-202ENST00000318007 SOCS7O14512 581 aa19.07■□□□□ 0.64
PDLIM5-202ENST00000318007 HELBQ8NG08 1087 aaPredicted RBP19.07■□□□□ 0.64
PDLIM5-202ENST00000318007 ZNF622Q969S3 477 aaKnown RBP eCLIP19.07■□□□□ 0.64
PDLIM5-202ENST00000318007 MPHOSPH8Q99549 860 aa19.07■□□□□ 0.64
PDLIM5-202ENST00000318007 PDZRN3Q9UPQ7 1066 aa19.07■□□□□ 0.64
PDLIM5-202ENST00000318007 RGS3P49796 1198 aa19.06■□□□□ 0.64
PDLIM5-202ENST00000318007 SMC5Q8IY18 1101 aa19.06■□□□□ 0.64
PDLIM5-202ENST00000318007 GCC1Q96CN9 775 aa19.06■□□□□ 0.64
PDLIM5-202ENST00000318007 IGHMBP2P38935 993 aaKnown RBP19.06■□□□□ 0.64
PDLIM5-202ENST00000318007 PTGER2P43116 358 aa19.06■□□□□ 0.64
PDLIM5-202ENST00000318007 C2CD5Q86YS7 1000 aa19.06■□□□□ 0.64
PDLIM5-202ENST00000318007 COPRSQ9NQ92 184 aa19.06■□□□□ 0.64
PDLIM5-202ENST00000318007 ZNF219Q9P2Y4 722 aaPredicted RBP19.06■□□□□ 0.64
PDLIM5-202ENST00000318007 COL11A2P13942 1736 aaPredicted RBP19.05■□□□□ 0.64
PDLIM5-202ENST00000318007 PDE6BP35913 854 aa19.05■□□□□ 0.64
PDLIM5-202ENST00000318007 ANKRD18AQ8IVF6 992 aa19.05■□□□□ 0.64
PDLIM5-202ENST00000318007 C16orf71Q8IYS4 520 aaPredicted RBP19.05■□□□□ 0.64
PDLIM5-202ENST00000318007 SNAP23O00161 211 aa19.04■□□□□ 0.64
PDLIM5-202ENST00000318007 SASH1O94885 1247 aa19.04■□□□□ 0.64
PDLIM5-202ENST00000318007 TFCP2Q12800 502 aa19.04■□□□□ 0.64
PDLIM5-202ENST00000318007 CDC5LQ99459 802 aaKnown RBP19.04■□□□□ 0.64
PDLIM5-202ENST00000318007 LRRCC1Q9C099 1032 aa19.04■□□□□ 0.64
PDLIM5-202ENST00000318007 ZBTB47Q9UFB7 747 aaPredicted RBP19.04■□□□□ 0.64
PDLIM5-202ENST00000318007 A0A0G2JLW4 131 aa19.04■□□□□ 0.64
PDLIM5-202ENST00000318007 TAF5LO75529 589 aa19.04■□□□□ 0.64
PDLIM5-202ENST00000318007 CRY2Q49AN0 593 aa19.04■□□□□ 0.64
PDLIM5-202ENST00000318007 ATG9AQ7Z3C6 839 aa19.04■□□□□ 0.64
PDLIM5-202ENST00000318007 RHPN1Q8TCX5 695 aa19.04■□□□□ 0.64
PDLIM5-202ENST00000318007 CACNA1SQ13698 1873 aa19.03■□□□□ 0.64
PDLIM5-202ENST00000318007 EYA2O00167 538 aa19.03■□□□□ 0.64
PDLIM5-202ENST00000318007 SRGNP10124 158 aa19.03■□□□□ 0.64
PDLIM5-202ENST00000318007 OLFM4Q6UX06 510 aa19.03■□□□□ 0.64
PDLIM5-202ENST00000318007 OTUD7AQ8TE49 926 aaPredicted RBP19.03■□□□□ 0.64
PDLIM5-202ENST00000318007 SGIP1Q9BQI5 828 aa19.03■□□□□ 0.64
PDLIM5-202ENST00000318007 SPON1Q9HCB6 807 aa19.03■□□□□ 0.64
PDLIM5-202ENST00000318007 H0YIN7 160 aa19.02■□□□□ 0.64
PDLIM5-202ENST00000318007 METTL24Q5JXM2 366 aa19.02■□□□□ 0.64
PDLIM5-202ENST00000318007 TSHZ3Q63HK5 1081 aa19.02■□□□□ 0.64
PDLIM5-202ENST00000318007 CHD1LQ86WJ1 897 aa19.02■□□□□ 0.64
PDLIM5-202ENST00000318007 RBM17Q96I25 401 aaKnown RBP19.02■□□□□ 0.64
PDLIM5-202ENST00000318007 NOP58Q9Y2X3 529 aaKnown RBP19.02■□□□□ 0.64
PDLIM5-202ENST00000318007 C10orf71Q711Q0 1435 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms