RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 AXIN2Q9Y2T1 843 aa17.32■□□□□ 0.36
PTPN9-201ENST00000306726 CHGBP05060 677 aa17.31■□□□□ 0.36
PTPN9-201ENST00000306726 CCDC192P0DO97 292 aa17.31■□□□□ 0.36
PTPN9-201ENST00000306726 LGR6Q9HBX8 967 aa17.31■□□□□ 0.36
PTPN9-201ENST00000306726 BTG4Q9NY30 223 aa17.31■□□□□ 0.36
PTPN9-201ENST00000306726 RIOK3O14730 519 aaKnown RBP17.31■□□□□ 0.36
PTPN9-201ENST00000306726 SF3A1Q15459 793 aaKnown RBP17.31■□□□□ 0.36
PTPN9-201ENST00000306726 ANO6Q4KMQ2 910 aa17.31■□□□□ 0.36
PTPN9-201ENST00000306726 LIG1P18858 919 aa17.3■□□□□ 0.36
PTPN9-201ENST00000306726 NBPF6Q5VWK0 638 aa17.3■□□□□ 0.36
PTPN9-201ENST00000306726 NBPF4Q96M43 638 aa17.3■□□□□ 0.36
PTPN9-201ENST00000306726 SOS1Q07889 1333 aaPredicted RBP17.3■□□□□ 0.36
PTPN9-201ENST00000306726 GNAT3A8MTJ3 354 aa17.3■□□□□ 0.36
PTPN9-201ENST00000306726 F13A1P00488 732 aa17.3■□□□□ 0.36
PTPN9-201ENST00000306726 ATP8B2P98198 1209 aa17.3■□□□□ 0.36
PTPN9-201ENST00000306726 ZNF853P0CG23 659 aa17.3■□□□□ 0.36
PTPN9-201ENST00000306726 RUFY3Q7L099 469 aa17.3■□□□□ 0.36
PTPN9-201ENST00000306726 FNBP4Q8N3X1 1017 aaPredicted RBP17.3■□□□□ 0.36
PTPN9-201ENST00000306726 ZFP91Q96JP5 570 aaPredicted RBP17.3■□□□□ 0.36
PTPN9-201ENST00000306726 USP44Q9H0E7 712 aa17.3■□□□□ 0.36
PTPN9-201ENST00000306726 DYNC1I1O14576 645 aa17.29■□□□□ 0.36
PTPN9-201ENST00000306726 ADAMTS2O95450 1211 aa17.29■□□□□ 0.36
PTPN9-201ENST00000306726 CCDC129Q6ZRS4 1044 aa17.29■□□□□ 0.36
PTPN9-201ENST00000306726 RIC3Q7Z5B4 369 aa17.29■□□□□ 0.36
PTPN9-201ENST00000306726 OVOS2A0A0G2JMS6 1433 aa17.29■□□□□ 0.36
PTPN9-201ENST00000306726 SLC39A6Q13433 755 aa17.29■□□□□ 0.36
PTPN9-201ENST00000306726 CDC37L1Q7L3B6 337 aa17.29■□□□□ 0.36
PTPN9-201ENST00000306726 NGLY1Q96IV0 654 aa17.29■□□□□ 0.36
PTPN9-201ENST00000306726 PRAMEF22A3QJZ6 481 aa17.28■□□□□ 0.36
PTPN9-201ENST00000306726 KRT85P78386 507 aa17.28■□□□□ 0.36
PTPN9-201ENST00000306726 COL9A3Q14050 684 aaPredicted RBP17.28■□□□□ 0.36
PTPN9-201ENST00000306726 SLFNL1Q499Z3 407 aa17.28■□□□□ 0.36
PTPN9-201ENST00000306726 GPATCH3Q96I76 525 aa17.28■□□□□ 0.36
PTPN9-201ENST00000306726 CGNQ9P2M7 1197 aaKnown RBP17.28■□□□□ 0.36
PTPN9-201ENST00000306726 ATP2B1P20020 1258 aa17.28■□□□□ 0.36
PTPN9-201ENST00000306726 SKIDA1Q1XH10 827 aa17.28■□□□□ 0.36
PTPN9-201ENST00000306726 MAP3K11Q16584 847 aa17.28■□□□□ 0.36
PTPN9-201ENST00000306726 ZNF530Q6P9A1 599 aaPredicted RBP17.28■□□□□ 0.36
PTPN9-201ENST00000306726 BLOC1S2Q6QNY1 142 aa17.28■□□□□ 0.36
PTPN9-201ENST00000306726 SDF4Q9BRK5 362 aa17.28■□□□□ 0.36
PTPN9-201ENST00000306726 TNNT1P13805 278 aa17.27■□□□□ 0.36
PTPN9-201ENST00000306726 RUFY2Q8WXA3 655 aa17.27■□□□□ 0.36
PTPN9-201ENST00000306726 FTOQ9C0B1 505 aaKnown RBP eCLIP17.27■□□□□ 0.36
PTPN9-201ENST00000306726 BCL2L12Q9HB09 334 aa17.27■□□□□ 0.36
PTPN9-201ENST00000306726 JAK2O60674 1132 aa17.27■□□□□ 0.36
PTPN9-201ENST00000306726 PTPRCP08575 1304 aa17.27■□□□□ 0.35
PTPN9-201ENST00000306726 ATP5J2-PTCD1G3V325 749 aa17.27■□□□□ 0.35
PTPN9-201ENST00000306726 PTCD1O75127 700 aaKnown RBP17.27■□□□□ 0.35
PTPN9-201ENST00000306726 UBE2HP62256 183 aa17.27■□□□□ 0.35
PTPN9-201ENST00000306726 VPS72Q15906 364 aa17.27■□□□□ 0.35
PTPN9-201ENST00000306726 PODXL2Q9NZ53 605 aa17.27■□□□□ 0.35
PTPN9-201ENST00000306726 RBM8AQ9Y5S9 174 aaKnown RBP17.27■□□□□ 0.35
PTPN9-201ENST00000306726 LRP6O75581 1613 aa17.27■□□□□ 0.35
PTPN9-201ENST00000306726 ARID5BQ14865 1188 aa17.26■□□□□ 0.35
PTPN9-201ENST00000306726 HSP90AB3PQ58FF7 597 aa17.26■□□□□ 0.35
PTPN9-201ENST00000306726 CYP2E1P05181 493 aaPredicted RBP17.26■□□□□ 0.35
PTPN9-201ENST00000306726 IL2RBP14784 551 aa17.26■□□□□ 0.35
PTPN9-201ENST00000306726 KIF1BPQ96EK5 621 aa17.26■□□□□ 0.35
PTPN9-201ENST00000306726 STRN4Q9NRL3 753 aa17.26■□□□□ 0.35
PTPN9-201ENST00000306726 MAP3K2Q9Y2U5 619 aa17.26■□□□□ 0.35
PTPN9-201ENST00000306726 PKD1L3Q7Z443 1732 aa17.26■□□□□ 0.35
PTPN9-201ENST00000306726 BTBD11A6QL63 1104 aa17.26■□□□□ 0.35
PTPN9-201ENST00000306726 ZNF500O60304 480 aaPredicted RBP17.26■□□□□ 0.35
PTPN9-201ENST00000306726 HOMER1Q86YM7 354 aa17.26■□□□□ 0.35
PTPN9-201ENST00000306726 ME1P48163 572 aa17.25■□□□□ 0.35
PTPN9-201ENST00000306726 SMC2O95347 1197 aa17.25■□□□□ 0.35
PTPN9-201ENST00000306726 ME3Q16798 604 aa17.25■□□□□ 0.35
PTPN9-201ENST00000306726 C1orf141Q5JVX7 400 aa17.25■□□□□ 0.35
PTPN9-201ENST00000306726 LARP1Q6PKG0 1096 aaKnown RBP17.25■□□□□ 0.35
PTPN9-201ENST00000306726 MAP7D2Q96T17 732 aa17.25■□□□□ 0.35
PTPN9-201ENST00000306726 ZNF165P49910 485 aa17.25■□□□□ 0.35
PTPN9-201ENST00000306726 BARGINQ6ZT62 677 aa17.25■□□□□ 0.35
PTPN9-201ENST00000306726 DDX46Q7L014 1031 aaKnown RBP17.25■□□□□ 0.35
PTPN9-201ENST00000306726 ATP2B3Q16720 1220 aa17.24■□□□□ 0.35
PTPN9-201ENST00000306726 OTUD7BQ6GQQ9 843 aa17.24■□□□□ 0.35
PTPN9-201ENST00000306726 MAP3K5Q99683 1374 aa17.24■□□□□ 0.35
PTPN9-201ENST00000306726 NMIQ13287 307 aaPredicted RBP17.24■□□□□ 0.35
PTPN9-201ENST00000306726 DNAAF4Q8WXU2 420 aa17.24■□□□□ 0.35
PTPN9-201ENST00000306726 CLIP2Q9UDT6 1046 aa17.24■□□□□ 0.35
PTPN9-201ENST00000306726 WNK3Q9BYP7 1800 aa17.24■□□□□ 0.35
PTPN9-201ENST00000306726 RGPD2P0DJD1 1756 aa17.24■□□□□ 0.35
PTPN9-201ENST00000306726 GNL2Q13823 731 aaKnown RBP17.24■□□□□ 0.35
PTPN9-201ENST00000306726 AKAP4Q5JQC9 854 aa17.24■□□□□ 0.35
PTPN9-201ENST00000306726 C8orf37Q96NL8 207 aa17.24■□□□□ 0.35
PTPN9-201ENST00000306726 BABAM1Q9NWV8 329 aa17.24■□□□□ 0.35
PTPN9-201ENST00000306726 HAND2P61296 217 aa17.23■□□□□ 0.35
PTPN9-201ENST00000306726 IL17REQ8NFR9 667 aa17.23■□□□□ 0.35
PTPN9-201ENST00000306726 SNRKQ9NRH2 765 aa17.23■□□□□ 0.35
PTPN9-201ENST00000306726 USP16Q9Y5T5 823 aa17.23■□□□□ 0.35
PTPN9-201ENST00000306726 TAF6LQ9Y6J9 622 aa17.23■□□□□ 0.35
PTPN9-201ENST00000306726 SPATA31A5Q5VU36 1347 aa17.23■□□□□ 0.35
PTPN9-201ENST00000306726 SPATA31A7Q8IWB4 1347 aa17.23■□□□□ 0.35
PTPN9-201ENST00000306726 HMGN5P82970 282 aaKnown RBP17.23■□□□□ 0.35
PTPN9-201ENST00000306726 CCDC112Q8NEF3 446 aa17.23■□□□□ 0.35
PTPN9-201ENST00000306726 SEC62Q99442 399 aaKnown RBP17.23■□□□□ 0.35
PTPN9-201ENST00000306726 PCDH11XQ9BZA7 1347 aa17.23■□□□□ 0.35
PTPN9-201ENST00000306726 PCDH11YQ9BZA8 1340 aa17.23■□□□□ 0.35
PTPN9-201ENST00000306726 POLR3DP05423 398 aaPredicted RBP17.23■□□□□ 0.35
PTPN9-201ENST00000306726 TYRO3Q06418 890 aa17.23■□□□□ 0.35
PTPN9-201ENST00000306726 SPATA31A1Q5TZJ5 1347 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms