RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 NEK4P51957 841 aa12.94□□□□□ -0.34
LSM3-201ENST00000306024 IRX3P78415 501 aaPredicted RBP12.94□□□□□ -0.34
LSM3-201ENST00000306024 PPP1R42Q7Z4L9 355 aa12.94□□□□□ -0.34
LSM3-201ENST00000306024 PALLDQ8WX93 1383 aa12.94□□□□□ -0.34
LSM3-201ENST00000306024 GNPATO15228 680 aa12.93□□□□□ -0.34
LSM3-201ENST00000306024 REC8O95072 547 aa12.93□□□□□ -0.34
LSM3-201ENST00000306024 PKP1Q13835 747 aa12.93□□□□□ -0.34
LSM3-201ENST00000306024 GORABQ5T7V8 394 aa12.93□□□□□ -0.34
LSM3-201ENST00000306024 ZGPATQ8N5A5 531 aaKnown RBP12.93□□□□□ -0.34
LSM3-201ENST00000306024 DLG5Q8TDM6 1919 aa12.93□□□□□ -0.34
LSM3-201ENST00000306024 TRIM6-TRIM34B2RNG4 842 aa12.93□□□□□ -0.34
LSM3-201ENST00000306024 TPM3P06753 285 aa12.93□□□□□ -0.34
LSM3-201ENST00000306024 ANKRD44Q8N8A2 993 aa12.93□□□□□ -0.34
LSM3-201ENST00000306024 CHAMP1Q96JM3 812 aa12.93□□□□□ -0.34
LSM3-201ENST00000306024 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.93□□□□□ -0.34
LSM3-201ENST00000306024 NBPF7P0C2Y1 421 aaPredicted RBP12.93□□□□□ -0.34
LSM3-201ENST00000306024 TMEM51Q9NW97 253 aa12.93□□□□□ -0.34
LSM3-201ENST00000306024 NUCB1Q02818 461 aa12.92□□□□□ -0.34
LSM3-201ENST00000306024 GPT2Q8TD30 523 aa12.92□□□□□ -0.34
LSM3-201ENST00000306024 TRIM34Q9BYJ4 488 aa12.92□□□□□ -0.34
LSM3-201ENST00000306024 IL1RAPL2Q9NP60 686 aa12.92□□□□□ -0.34
LSM3-201ENST00000306024 RTCBQ9Y3I0 505 aaKnown RBP12.92□□□□□ -0.34
LSM3-201ENST00000306024 GOLGA6L4A6NEF3 574 aa12.92□□□□□ -0.34
LSM3-201ENST00000306024 ABCC6O95255 1503 aa12.92□□□□□ -0.34
LSM3-201ENST00000306024 HCLS1P14317 486 aaPredicted RBP12.92□□□□□ -0.34
LSM3-201ENST00000306024 TPD52L1Q16890 204 aaPredicted RBP12.92□□□□□ -0.34
LSM3-201ENST00000306024 C16orf45Q96MC5 204 aaPredicted RBP12.92□□□□□ -0.34
LSM3-201ENST00000306024 IFIT2P09913 472 aaKnown RBP12.92□□□□□ -0.34
LSM3-201ENST00000306024 RFC4P35249 363 aa12.92□□□□□ -0.34
LSM3-201ENST00000306024 CRKLP46109 303 aaKnown RBP12.92□□□□□ -0.34
LSM3-201ENST00000306024 CEP85Q6P2H3 762 aa12.92□□□□□ -0.34
LSM3-201ENST00000306024 GPATCH3Q96I76 525 aa12.92□□□□□ -0.34
LSM3-201ENST00000306024 USP44Q9H0E7 712 aa12.92□□□□□ -0.34
LSM3-201ENST00000306024 COL14A1Q05707 1796 aaKnown RBP12.92□□□□□ -0.34
LSM3-201ENST00000306024 BEND3Q5T5X7 828 aa12.91□□□□□ -0.34
LSM3-201ENST00000306024 CLASRPQ8N2M8 674 aaKnown RBP12.91□□□□□ -0.34
LSM3-201ENST00000306024 TNS2Q63HR2 1409 aa12.91□□□□□ -0.34
LSM3-201ENST00000306024 SMARCA5O60264 1052 aaPredicted RBP12.91□□□□□ -0.34
LSM3-201ENST00000306024 APBA3O96018 575 aa12.91□□□□□ -0.34
LSM3-201ENST00000306024 CCDC57Q2TAC2 916 aa12.91□□□□□ -0.34
LSM3-201ENST00000306024 LRRCC1Q9C099 1032 aa12.91□□□□□ -0.34
LSM3-201ENST00000306024 GABPB1Q06547 395 aaPredicted RBP12.91□□□□□ -0.34
LSM3-201ENST00000306024 ZNF710Q8N1W2 664 aa12.9□□□□□ -0.34
LSM3-201ENST00000306024 NIP7Q9Y221 180 aaKnown RBP eCLIP12.9□□□□□ -0.34
LSM3-201ENST00000306024 RGPD1P0DJD0 1748 aa12.9□□□□□ -0.34
LSM3-201ENST00000306024 NBPF26B4DH59 902 aa12.9□□□□□ -0.34
LSM3-201ENST00000306024 NBPF14Q5TI25 921 aa12.9□□□□□ -0.34
LSM3-201ENST00000306024 NBPF10Q6P3W6 841 aaKnown RBP12.9□□□□□ -0.34
LSM3-201ENST00000306024 KRT222Q8N1A0 295 aa12.9□□□□□ -0.34
LSM3-201ENST00000306024 NBPF15Q8N660 670 aa12.9□□□□□ -0.34
LSM3-201ENST00000306024 HSP90B1P14625 803 aaKnown RBP12.9□□□□□ -0.34
LSM3-201ENST00000306024 ATP8B2P98198 1209 aa12.9□□□□□ -0.34
LSM3-201ENST00000306024 FBXO41Q8TF61 875 aa12.9□□□□□ -0.34
LSM3-201ENST00000306024 COL16A1Q07092 1604 aaPredicted RBP12.89□□□□□ -0.35
LSM3-201ENST00000306024 GCKRQ14397 625 aa12.89□□□□□ -0.35
LSM3-201ENST00000306024 NEURL1BA8MQ27 555 aa12.89□□□□□ -0.35
LSM3-201ENST00000306024 CERS3Q8IU89 383 aa12.89□□□□□ -0.35
LSM3-201ENST00000306024 RILPL2Q969X0 211 aa12.89□□□□□ -0.35
LSM3-201ENST00000306024 NEUROD6Q96NK8 337 aa12.89□□□□□ -0.35
LSM3-201ENST00000306024 PLEKHG2Q9H7P9 1386 aa12.89□□□□□ -0.35
LSM3-201ENST00000306024 HMGB2P26583 209 aaKnown RBP12.89□□□□□ -0.35
LSM3-201ENST00000306024 DDIT3P35638 169 aa12.89□□□□□ -0.35
LSM3-201ENST00000306024 UVSSAQ2YD98 709 aa12.89□□□□□ -0.35
LSM3-201ENST00000306024 TEX35Q5T0J7 233 aa12.89□□□□□ -0.35
LSM3-201ENST00000306024 LMBR1LQ6UX01 489 aa12.88□□□□□ -0.35
LSM3-201ENST00000306024 FAM89AQ96GI7 184 aa12.88□□□□□ -0.35
LSM3-201ENST00000306024 MARF1Q9Y4F3 1742 aaKnown RBP12.88□□□□□ -0.35
LSM3-201ENST00000306024 USP54Q70EL1 1684 aa12.88□□□□□ -0.35
LSM3-201ENST00000306024 FIBPO43427 364 aa12.88□□□□□ -0.35
LSM3-201ENST00000306024 CYP19A1P11511 503 aaPredicted RBP12.88□□□□□ -0.35
LSM3-201ENST00000306024 TNNT1P13805 278 aa12.88□□□□□ -0.35
LSM3-201ENST00000306024 IL6STP40189 918 aaPredicted RBP12.88□□□□□ -0.35
LSM3-201ENST00000306024 TSPYL1Q9H0U9 437 aa12.88□□□□□ -0.35
LSM3-201ENST00000306024 APPP05067 770 aa12.88□□□□□ -0.35
LSM3-201ENST00000306024 TCIRG1Q13488 830 aa12.88□□□□□ -0.35
LSM3-201ENST00000306024 ERC1Q8IUD2 1116 aa12.88□□□□□ -0.35
LSM3-201ENST00000306024 TFCP2L1Q9NZI6 479 aa12.88□□□□□ -0.35
LSM3-201ENST00000306024 SLIT2O94813 1529 aa12.88□□□□□ -0.35
LSM3-201ENST00000306024 CCDC191Q8NCU4 936 aa12.87□□□□□ -0.35
LSM3-201ENST00000306024 BICC1Q9H694 974 aaKnown RBP12.87□□□□□ -0.35
LSM3-201ENST00000306024 CNNM1Q9NRU3 951 aa12.87□□□□□ -0.35
LSM3-201ENST00000306024 TRAPPC3LQ5T215 181 aa12.87□□□□□ -0.35
LSM3-201ENST00000306024 SUCLG2Q96I99 432 aa12.87□□□□□ -0.35
LSM3-201ENST00000306024 PNMA6EA0A0J9YXQ4 647 aa12.86□□□□□ -0.35
LSM3-201ENST00000306024 PDIA6Q15084 440 aa12.86□□□□□ -0.35
LSM3-201ENST00000306024 KIF1BPQ96EK5 621 aa12.86□□□□□ -0.35
LSM3-201ENST00000306024 TRIM5Q9C035 493 aa12.86□□□□□ -0.35
LSM3-201ENST00000306024 PA2G4Q9UQ80 394 aaKnown RBP12.86□□□□□ -0.35
LSM3-201ENST00000306024 BCL9LQ86UU0 1499 aa12.86□□□□□ -0.35
LSM3-201ENST00000306024 MAP3K15Q6ZN16 1313 aa12.86□□□□□ -0.35
LSM3-201ENST00000306024 LMO7Q8WWI1 1683 aa12.86□□□□□ -0.35
LSM3-201ENST00000306024 GTF2F1P35269 517 aaKnown RBP eCLIP12.86□□□□□ -0.35
LSM3-201ENST00000306024 CCDC183Q5T5S1 534 aa12.86□□□□□ -0.35
LSM3-201ENST00000306024 IFIT5Q13325 482 aaKnown RBP12.86□□□□□ -0.35
LSM3-201ENST00000306024 SETDB2Q96T68 719 aa12.86□□□□□ -0.35
LSM3-201ENST00000306024 DCTPP1Q9H773 170 aa12.86□□□□□ -0.35
LSM3-201ENST00000306024 NSFL1CQ9UNZ2 370 aaKnown RBP12.86□□□□□ -0.35
LSM3-201ENST00000306024 BCL9O00512 1426 aa12.85□□□□□ -0.35
LSM3-201ENST00000306024 IRX5P78411 483 aaPredicted RBP12.85□□□□□ -0.35
LSM3-201ENST00000306024 GIGYF2Q6Y7W6 1299 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms