RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 CTSWP56202 376 aa10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 C1orf115Q9H7X2 142 aa10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 IRS4O14654 1257 aaPredicted RBP10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 ANP32AP39687 249 aaKnown RBP10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 TPTE2Q6XPS3 522 aa10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 POLRMTO00411 1230 aaKnown RBP10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 GPTP24298 496 aa10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 NFIXQ14938 502 aa10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 DEFB132Q7Z7B7 95 aa10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 ERC1Q8IUD2 1116 aa10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 CHMP3Q9Y3E7 222 aa10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 SPEF2Q9C093 1822 aa10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 COL11A2P13942 1736 aaPredicted RBP10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 IGHDP01880 384 aa10.44□□□□□ -0.74
PTPDC1-201ENST00000288976 CIAO1O76071 339 aa10.43□□□□□ -0.74
PTPDC1-201ENST00000288976 COPRSQ9NQ92 184 aa10.43□□□□□ -0.74
PTPDC1-201ENST00000288976 KIAA1551Q9HCM1 1747 aa10.43□□□□□ -0.74
PTPDC1-201ENST00000288976 ST5P78524 1137 aa10.43□□□□□ -0.74
PTPDC1-201ENST00000288976 SF3B3Q15393 1217 aaKnown RBP10.43□□□□□ -0.74
PTPDC1-201ENST00000288976 PDZRN3Q9UPQ7 1066 aa10.43□□□□□ -0.74
PTPDC1-201ENST00000288976 EP400Q96L91 3159 aa10.43□□□□□ -0.74
PTPDC1-201ENST00000288976 C10orf71Q711Q0 1435 aa10.43□□□□□ -0.74
PTPDC1-201ENST00000288976 RFX5P48382 616 aaPredicted RBP10.43□□□□□ -0.74
PTPDC1-201ENST00000288976 NBPF5PQ86XG9 351 aaPredicted RBP10.43□□□□□ -0.74
PTPDC1-201ENST00000288976 KCNJ4P48050 445 aa10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 ABCC12Q96J65 1359 aa10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 CCDC152Q4G0S7 254 aa10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 KLRG2A4D1S0 409 aaPredicted RBP10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 SRGAP3O43295 1099 aa10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 NUCB1Q02818 461 aa10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 B4GALNT3Q6L9W6 998 aa10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 CNBD1Q8NA66 436 aa10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 FAM89AQ96GI7 184 aa10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 PNMA6EA0A0J9YXQ4 647 aa10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 DCAF8L1A6NGE4 600 aa10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 EPHA10Q5JZY3 1008 aa10.42□□□□□ -0.74
PTPDC1-201ENST00000288976 ERFEQ4G0M1 354 aa10.41□□□□□ -0.74
PTPDC1-201ENST00000288976 TTLL11Q8NHH1 800 aa10.41□□□□□ -0.74
PTPDC1-201ENST00000288976 SERPINB2P05120 415 aa10.41□□□□□ -0.74
PTPDC1-201ENST00000288976 DDR1Q08345 913 aa10.41□□□□□ -0.74
PTPDC1-201ENST00000288976 PARP3Q9Y6F1 533 aa10.41□□□□□ -0.74
PTPDC1-201ENST00000288976 PRR5LQ6MZQ0 368 aa10.4□□□□□ -0.74
PTPDC1-201ENST00000288976 FRAT2O75474 233 aaPredicted RBP10.4□□□□□ -0.74
PTPDC1-201ENST00000288976 LMBR1LQ6UX01 489 aa10.4□□□□□ -0.74
PTPDC1-201ENST00000288976 CRY2Q49AN0 593 aa10.4□□□□□ -0.74
PTPDC1-201ENST00000288976 GPR108Q9NPR9 543 aa10.4□□□□□ -0.74
PTPDC1-201ENST00000288976 LTBP1Q14766 1721 aa10.4□□□□□ -0.74
PTPDC1-201ENST00000288976 ANKRD18BA2A2Z9 1011 aa10.4□□□□□ -0.75
PTPDC1-201ENST00000288976 PTPN12Q05209 780 aaKnown RBP10.39□□□□□ -0.75
PTPDC1-201ENST00000288976 CCDC57Q2TAC2 916 aa10.39□□□□□ -0.75
PTPDC1-201ENST00000288976 SMIM5Q71RC9 77 aa10.39□□□□□ -0.75
PTPDC1-201ENST00000288976 IFIT5Q13325 482 aaKnown RBP10.39□□□□□ -0.75
PTPDC1-201ENST00000288976 AOX1Q06278 1338 aa10.39□□□□□ -0.75
PTPDC1-201ENST00000288976 LRRCC1Q9C099 1032 aa10.39□□□□□ -0.75
PTPDC1-201ENST00000288976 BICDL1Q6ZP65 573 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 TMC4Q7Z404 712 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 KIF1BPQ96EK5 621 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 NLRP3Q96P20 1036 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 BRIP1Q9BX63 1249 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 PDE6BP35913 854 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 IL15P40933 162 aaPredicted RBP10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 CHD1LQ86WJ1 897 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 CDC5LQ99459 802 aaKnown RBP10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 MTFR1LQ9H019 292 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 ZNF609O15014 1411 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 ZBTB22O15209 634 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 ITGA6P23229 1130 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 MROH5Q6ZUA9 1318 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 DUOX1Q9NRD9 1551 aa10.38□□□□□ -0.75
PTPDC1-201ENST00000288976 HOXA10P31260 410 aaPredicted RBP10.37□□□□□ -0.75
PTPDC1-201ENST00000288976 G3BP1Q13283 466 aaKnown RBP eCLIP10.37□□□□□ -0.75
PTPDC1-201ENST00000288976 BRCA1P38398 1863 aaKnown RBP10.37□□□□□ -0.75
PTPDC1-201ENST00000288976 EYA2O00167 538 aa10.37□□□□□ -0.75
PTPDC1-201ENST00000288976 FAM161AQ3B820 660 aa10.37□□□□□ -0.75
PTPDC1-201ENST00000288976 NUTM1Q86Y26 1132 aa10.37□□□□□ -0.75
PTPDC1-201ENST00000288976 GREM2Q9H772 168 aa10.37□□□□□ -0.75
PTPDC1-201ENST00000288976 COL4A1P02462 1669 aa10.37□□□□□ -0.75
PTPDC1-201ENST00000288976 MMP10P09238 476 aa10.37□□□□□ -0.75
PTPDC1-201ENST00000288976 RBM17Q96I25 401 aaKnown RBP10.37□□□□□ -0.75
PTPDC1-201ENST00000288976 CRAMP1Q96RY5 1269 aa10.37□□□□□ -0.75
PTPDC1-201ENST00000288976 SURF6O75683 361 aaKnown RBP10.36□□□□□ -0.75
PTPDC1-201ENST00000288976 HCLS1P14317 486 aaPredicted RBP10.36□□□□□ -0.75
PTPDC1-201ENST00000288976 TAF7LQ5H9L4 462 aa10.36□□□□□ -0.75
PTPDC1-201ENST00000288976 ILDR2Q71H61 639 aa10.36□□□□□ -0.75
PTPDC1-201ENST00000288976 ATG9AQ7Z3C6 839 aa10.36□□□□□ -0.75
PTPDC1-201ENST00000288976 SYNE4Q8N205 404 aa10.36□□□□□ -0.75
PTPDC1-201ENST00000288976 RHPN1Q8TCX5 695 aa10.36□□□□□ -0.75
PTPDC1-201ENST00000288976 JARID2Q92833 1246 aaPredicted RBP10.36□□□□□ -0.75
PTPDC1-201ENST00000288976 BSDC1Q9NW68 430 aaPredicted RBP10.36□□□□□ -0.75
PTPDC1-201ENST00000288976 IGHMBP2P38935 993 aaKnown RBP10.35□□□□□ -0.75
PTPDC1-201ENST00000288976 STYK1Q6J9G0 422 aa10.35□□□□□ -0.75
PTPDC1-201ENST00000288976 SALL3Q9BXA9 1300 aa10.35□□□□□ -0.75
PTPDC1-201ENST00000288976 RGS3P49796 1198 aa10.35□□□□□ -0.75
PTPDC1-201ENST00000288976 ANP32BQ92688 251 aaKnown RBP10.35□□□□□ -0.75
PTPDC1-201ENST00000288976 GRAPQ13588 217 aa10.35□□□□□ -0.75
PTPDC1-201ENST00000288976 GRAPLQ8TC17 118 aaPredicted RBP10.35□□□□□ -0.75
PTPDC1-201ENST00000288976 OSBPL3Q9H4L5 887 aa10.35□□□□□ -0.75
PTPDC1-201ENST00000288976 NPR1P16066 1061 aa10.35□□□□□ -0.75
PTPDC1-201ENST00000288976 AKAP2Q9Y2D5 859 aa10.35□□□□□ -0.75
PTPDC1-201ENST00000288976 POLD1P28340 1107 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms