RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 METTL22Q9BUU2 404 aaPredicted RBP11.81□□□□□ -0.52
HMGN1-201ENST00000288344 NYXQ9GZU5 481 aa11.81□□□□□ -0.52
HMGN1-201ENST00000288344 MYH16Q9H6N6 1097 aa11.81□□□□□ -0.52
HMGN1-201ENST00000288344 BCS1LQ9Y276 419 aa11.81□□□□□ -0.52
HMGN1-201ENST00000288344 PCDHB13Q9Y5F0 798 aa11.81□□□□□ -0.52
HMGN1-201ENST00000288344 RNF123Q5XPI4 1314 aa11.81□□□□□ -0.52
HMGN1-201ENST00000288344 ST5P78524 1137 aa11.8□□□□□ -0.52
HMGN1-201ENST00000288344 UTP14AQ9BVJ6 771 aaKnown RBP11.8□□□□□ -0.52
HMGN1-201ENST00000288344 PCDHB8Q9UN66 801 aa11.8□□□□□ -0.52
HMGN1-201ENST00000288344 FER1L6Q2WGJ9 1857 aa11.79□□□□□ -0.52
HMGN1-201ENST00000288344 PI4KAP2A4QPH2 592 aa11.79□□□□□ -0.52
HMGN1-201ENST00000288344 FAM177BA6PVY3 158 aa11.79□□□□□ -0.52
HMGN1-201ENST00000288344 ATP5J2-PTCD1G3V325 749 aa11.79□□□□□ -0.52
HMGN1-201ENST00000288344 NFKBIEO00221 500 aa11.79□□□□□ -0.52
HMGN1-201ENST00000288344 NPR1P16066 1061 aa11.79□□□□□ -0.52
HMGN1-201ENST00000288344 PPP1R42Q7Z4L9 355 aa11.79□□□□□ -0.52
HMGN1-201ENST00000288344 PI4KAP1Q8N8J0 262 aa11.79□□□□□ -0.52
HMGN1-201ENST00000288344 YY1P25490 414 aa11.78□□□□□ -0.52
HMGN1-201ENST00000288344 CASP7P55210 303 aa11.78□□□□□ -0.52
HMGN1-201ENST00000288344 LAMB2P55268 1798 aa11.78□□□□□ -0.52
HMGN1-201ENST00000288344 FLIIQ13045 1269 aa11.78□□□□□ -0.52
HMGN1-201ENST00000288344 SF3B3Q15393 1217 aaKnown RBP11.78□□□□□ -0.52
HMGN1-201ENST00000288344 DDX60Q8IY21 1712 aaKnown RBP11.78□□□□□ -0.52
HMGN1-201ENST00000288344 PELP1Q8IZL8 1130 aaKnown RBP11.78□□□□□ -0.52
HMGN1-201ENST00000288344 CCDC191Q8NCU4 936 aa11.78□□□□□ -0.52
HMGN1-201ENST00000288344 CNKSR1Q969H4 720 aa11.78□□□□□ -0.52
HMGN1-201ENST00000288344 CRAMP1Q96RY5 1269 aa11.78□□□□□ -0.52
HMGN1-201ENST00000288344 MAP3K2Q9Y2U5 619 aa11.78□□□□□ -0.52
HMGN1-201ENST00000288344 H7C1W4 665 aa11.77□□□□□ -0.53
HMGN1-201ENST00000288344 BRPF1P55201 1214 aaPredicted RBP11.77□□□□□ -0.53
HMGN1-201ENST00000288344 PRPF40BQ6NWY9 871 aaKnown RBP11.77□□□□□ -0.53
HMGN1-201ENST00000288344 ZNF467Q7Z7K2 595 aaPredicted RBP11.77□□□□□ -0.53
HMGN1-201ENST00000288344 MRPL50Q8N5N7 158 aaKnown RBP11.77□□□□□ -0.53
HMGN1-201ENST00000288344 ZBTB38Q8NAP3 1195 aaPredicted RBP11.77□□□□□ -0.53
HMGN1-201ENST00000288344 FAM89AQ96GI7 184 aa11.77□□□□□ -0.53
HMGN1-201ENST00000288344 COL4A1P02462 1669 aa11.76□□□□□ -0.53
HMGN1-201ENST00000288344 SH3TC1Q8TE82 1336 aa11.76□□□□□ -0.53
HMGN1-201ENST00000288344 LTBP3Q9NS15 1303 aa11.76□□□□□ -0.53
HMGN1-201ENST00000288344 HCLS1P14317 486 aaPredicted RBP11.76□□□□□ -0.53
HMGN1-201ENST00000288344 ARHGAP27Q6ZUM4 889 aa11.76□□□□□ -0.53
HMGN1-201ENST00000288344 RIC3Q7Z5B4 369 aa11.76□□□□□ -0.53
HMGN1-201ENST00000288344 SLC51AQ86UW1 340 aa11.76□□□□□ -0.53
HMGN1-201ENST00000288344 ZNF784Q8NCA9 323 aaPredicted RBP11.76□□□□□ -0.53
HMGN1-201ENST00000288344 ZNF622Q969S3 477 aaKnown RBP eCLIP11.76□□□□□ -0.53
HMGN1-201ENST00000288344 ZNF428Q96B54 188 aa11.76□□□□□ -0.53
HMGN1-201ENST00000288344 TRMT112Q9UI30 125 aaKnown RBP11.76□□□□□ -0.53
HMGN1-201ENST00000288344 NEURL1BA8MQ27 555 aa11.75□□□□□ -0.53
HMGN1-201ENST00000288344 C21orf2O43822 256 aa11.75□□□□□ -0.53
HMGN1-201ENST00000288344 PCCAP05165 728 aaPredicted RBP11.75□□□□□ -0.53
HMGN1-201ENST00000288344 ALDH1B1P30837 517 aa11.75□□□□□ -0.53
HMGN1-201ENST00000288344 BEND3Q5T5X7 828 aa11.75□□□□□ -0.53
HMGN1-201ENST00000288344 OLFM4Q6UX06 510 aa11.75□□□□□ -0.53
HMGN1-201ENST00000288344 SSH1Q8WYL5 1049 aa11.75□□□□□ -0.53
HMGN1-201ENST00000288344 NLRP3Q96P20 1036 aa11.75□□□□□ -0.53
HMGN1-201ENST00000288344 MYD88Q99836 296 aa11.75□□□□□ -0.53
HMGN1-201ENST00000288344 STK31Q9BXU1 1019 aa11.75□□□□□ -0.53
HMGN1-201ENST00000288344 TAF1P21675 1872 aa11.75□□□□□ -0.53
HMGN1-201ENST00000288344 DDX58O95786 925 aaKnown RBP11.74□□□□□ -0.53
HMGN1-201ENST00000288344 CWF19L2Q2TBE0 894 aaKnown RBP11.74□□□□□ -0.53
HMGN1-201ENST00000288344 DNAAF4Q8WXU2 420 aa11.74□□□□□ -0.53
HMGN1-201ENST00000288344 CACNA1SQ13698 1873 aa11.73□□□□□ -0.53
HMGN1-201ENST00000288344 CCDC88AQ3V6T2 1871 aa11.73□□□□□ -0.53
HMGN1-201ENST00000288344 CDHR2Q9BYE9 1310 aa11.73□□□□□ -0.53
HMGN1-201ENST00000288344 F6X3S4 739 aa11.73□□□□□ -0.53
HMGN1-201ENST00000288344 CT47B1P0C2W7 299 aaPredicted RBP11.73□□□□□ -0.53
HMGN1-201ENST00000288344 GTF2E1P29083 439 aaPredicted RBP11.73□□□□□ -0.53
HMGN1-201ENST00000288344 PDAP1Q13442 181 aaKnown RBP11.73□□□□□ -0.53
HMGN1-201ENST00000288344 GCKRQ14397 625 aa11.73□□□□□ -0.53
HMGN1-201ENST00000288344 ALDH1L2Q3SY69 923 aa11.73□□□□□ -0.53
HMGN1-201ENST00000288344 LINS1Q8NG48 757 aa11.73□□□□□ -0.53
HMGN1-201ENST00000288344 CWC25Q9NXE8 425 aaPredicted RBP11.73□□□□□ -0.53
HMGN1-201ENST00000288344 DICER1Q9UPY3 1922 aaKnown RBP11.73□□□□□ -0.53
HMGN1-201ENST00000288344 ABCC4O15439 1325 aa11.72□□□□□ -0.53
HMGN1-201ENST00000288344 IRS4O14654 1257 aaPredicted RBP11.72□□□□□ -0.53
HMGN1-201ENST00000288344 POTEIP0CG38 1075 aa11.72□□□□□ -0.53
HMGN1-201ENST00000288344 RASSF7Q02833 373 aa11.72□□□□□ -0.53
HMGN1-201ENST00000288344 C9orf131Q5VYM1 1079 aa11.72□□□□□ -0.53
HMGN1-201ENST00000288344 JARID2Q92833 1246 aaPredicted RBP11.72□□□□□ -0.53
HMGN1-201ENST00000288344 PLA2G12BQ9BX93 195 aa11.72□□□□□ -0.53
HMGN1-201ENST00000288344 BBOX1O75936 387 aa11.71□□□□□ -0.53
HMGN1-201ENST00000288344 CSF1RP07333 972 aa11.71□□□□□ -0.53
HMGN1-201ENST00000288344 LMNB1P20700 586 aa11.71□□□□□ -0.53
HMGN1-201ENST00000288344 RARSP54136 660 aaKnown RBP11.71□□□□□ -0.53
HMGN1-201ENST00000288344 FKBP5Q13451 457 aaPredicted RBP11.71□□□□□ -0.53
HMGN1-201ENST00000288344 IFNL1Q8IU54 200 aa11.71□□□□□ -0.53
HMGN1-201ENST00000288344 RBM17Q96I25 401 aaKnown RBP11.71□□□□□ -0.53
HMGN1-201ENST00000288344 KAZALD1Q96I82 304 aa11.71□□□□□ -0.53
HMGN1-201ENST00000288344 ATP6V0A2Q9Y487 856 aa11.71□□□□□ -0.53
HMGN1-201ENST00000288344 UTYO14607 1347 aa11.7□□□□□ -0.54
HMGN1-201ENST00000288344 CC2D2BQ6DHV5 1058 aa11.7□□□□□ -0.54
HMGN1-201ENST00000288344 SP8Q8IXZ3 490 aa11.7□□□□□ -0.54
HMGN1-201ENST00000288344 TTLL11Q8NHH1 800 aa11.7□□□□□ -0.54
HMGN1-201ENST00000288344 CELF1Q92879 486 aaKnown RBP11.7□□□□□ -0.54
HMGN1-201ENST00000288344 PSMD1Q99460 953 aa11.7□□□□□ -0.54
HMGN1-201ENST00000288344 RTFDC1Q9BY42 306 aaPredicted RBP11.7□□□□□ -0.54
HMGN1-201ENST00000288344 COL4A5P29400 1685 aa11.7□□□□□ -0.54
HMGN1-201ENST00000288344 ZBED9Q6R2W3 1325 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 CEP350Q5VT06 3117 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 POTECB2RU33 542 aa11.69□□□□□ -0.54
HMGN1-201ENST00000288344 NPHP1O15259 732 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms