RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 ZNF530Q6P9A1 599 aaPredicted RBP12.3□□□□□ -0.44
SKA1-201ENST00000285116 CCDC83Q8IWF9 413 aa12.3□□□□□ -0.44
SKA1-201ENST00000285116 LRRC59Q96AG4 307 aaKnown RBP12.3□□□□□ -0.44
SKA1-201ENST00000285116 NUTM2BA6NNL0 878 aaPredicted RBP12.29□□□□□ -0.44
SKA1-201ENST00000285116 NUTM2EB1AL46 878 aaPredicted RBP12.29□□□□□ -0.44
SKA1-201ENST00000285116 GRM8O00222 908 aa12.29□□□□□ -0.44
SKA1-201ENST00000285116 CCDC192P0DO97 292 aa12.29□□□□□ -0.44
SKA1-201ENST00000285116 OS9Q13438 667 aaPredicted RBP12.29□□□□□ -0.44
SKA1-201ENST00000285116 NUTM2AQ8IVF1 878 aaPredicted RBP12.29□□□□□ -0.44
SKA1-201ENST00000285116 PARP4Q9UKK3 1724 aaKnown RBP12.29□□□□□ -0.44
SKA1-201ENST00000285116 SLC27A2O14975 620 aa12.29□□□□□ -0.44
SKA1-201ENST00000285116 KCNQ3O43525 872 aa12.29□□□□□ -0.44
SKA1-201ENST00000285116 KRT85P78386 507 aa12.29□□□□□ -0.44
SKA1-201ENST00000285116 DNM1Q05193 864 aaKnown RBP12.29□□□□□ -0.44
SKA1-201ENST00000285116 KAZALD1Q96I82 304 aa12.29□□□□□ -0.44
SKA1-201ENST00000285116 DDX21Q9NR30 783 aaKnown RBP eCLIP12.29□□□□□ -0.44
SKA1-201ENST00000285116 AFDNP55196 1824 aaKnown RBP12.29□□□□□ -0.44
SKA1-201ENST00000285116 SPEF2Q9C093 1822 aa12.28□□□□□ -0.44
SKA1-201ENST00000285116 SASH1O94885 1247 aa12.28□□□□□ -0.44
SKA1-201ENST00000285116 DDX58O95786 925 aaKnown RBP12.28□□□□□ -0.44
SKA1-201ENST00000285116 GABPB1Q06547 395 aaPredicted RBP12.28□□□□□ -0.44
SKA1-201ENST00000285116 SCAND2PQ9GZW5 306 aaPredicted RBP12.28□□□□□ -0.44
SKA1-201ENST00000285116 C9orf78Q9NZ63 289 aaPredicted RBP12.28□□□□□ -0.44
SKA1-201ENST00000285116 TPCN1Q9ULQ1 816 aa12.28□□□□□ -0.44
SKA1-201ENST00000285116 ALS2Q96Q42 1657 aa12.28□□□□□ -0.44
SKA1-201ENST00000285116 ARFGEF2Q9Y6D5 1785 aa12.28□□□□□ -0.44
SKA1-201ENST00000285116 FIBPO43427 364 aa12.28□□□□□ -0.44
SKA1-201ENST00000285116 RPS6KB1P23443 525 aa12.28□□□□□ -0.44
SKA1-201ENST00000285116 LAMA4Q16363 1823 aa12.28□□□□□ -0.44
SKA1-201ENST00000285116 CAVIN2O95810 425 aa12.27□□□□□ -0.44
SKA1-201ENST00000285116 AACSQ86V21 672 aa12.27□□□□□ -0.44
SKA1-201ENST00000285116 ARHGEF25Q86VW2 580 aa12.27□□□□□ -0.44
SKA1-201ENST00000285116 FAM200AQ8TCP9 573 aa12.27□□□□□ -0.44
SKA1-201ENST00000285116 PKD1L3Q7Z443 1732 aa12.27□□□□□ -0.44
SKA1-201ENST00000285116 NMIQ13287 307 aaPredicted RBP12.27□□□□□ -0.45
SKA1-201ENST00000285116 KRT32Q14532 448 aa12.27□□□□□ -0.45
SKA1-201ENST00000285116 DDX19AQ9NUU7 478 aaKnown RBP12.27□□□□□ -0.45
SKA1-201ENST00000285116 NPHP3Q7Z494 1330 aa12.27□□□□□ -0.45
SKA1-201ENST00000285116 RGPD5Q99666 1765 aa12.27□□□□□ -0.45
SKA1-201ENST00000285116 AP5Z1O43299 807 aa12.27□□□□□ -0.45
SKA1-201ENST00000285116 NCBP1Q09161 790 aaKnown RBP12.27□□□□□ -0.45
SKA1-201ENST00000285116 C1orf141Q5JVX7 400 aa12.27□□□□□ -0.45
SKA1-201ENST00000285116 ZNF771Q7L3S4 317 aaPredicted RBP12.27□□□□□ -0.45
SKA1-201ENST00000285116 GIMAP6Q6P9H5 292 aa12.26□□□□□ -0.45
SKA1-201ENST00000285116 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.26□□□□□ -0.45
SKA1-201ENST00000285116 TTC6Q86TZ1 520 aa12.26□□□□□ -0.45
SKA1-201ENST00000285116 EAF2Q96CJ1 260 aaPredicted RBP12.26□□□□□ -0.45
SKA1-201ENST00000285116 SUCLG2Q96I99 432 aa12.26□□□□□ -0.45
SKA1-201ENST00000285116 CPA1P15085 419 aa12.26□□□□□ -0.45
SKA1-201ENST00000285116 G3BP1Q13283 466 aaKnown RBP eCLIP12.26□□□□□ -0.45
SKA1-201ENST00000285116 PDIA6Q15084 440 aa12.26□□□□□ -0.45
SKA1-201ENST00000285116 MAP3K11Q16584 847 aa12.26□□□□□ -0.45
SKA1-201ENST00000285116 LARP1BQ659C4 914 aaKnown RBP12.26□□□□□ -0.45
SKA1-201ENST00000285116 CGNQ9P2M7 1197 aaKnown RBP12.26□□□□□ -0.45
SKA1-201ENST00000285116 GLI3P10071 1580 aa12.26□□□□□ -0.45
SKA1-201ENST00000285116 SMTNL1A8MU46 457 aa12.25□□□□□ -0.45
SKA1-201ENST00000285116 ADAMTS2O95450 1211 aa12.25□□□□□ -0.45
SKA1-201ENST00000285116 TOB2Q14106 344 aaPredicted RBP12.25□□□□□ -0.45
SKA1-201ENST00000285116 BLOC1S2Q6QNY1 142 aa12.25□□□□□ -0.45
SKA1-201ENST00000285116 SPC24Q8NBT2 197 aa12.25□□□□□ -0.45
SKA1-201ENST00000285116 BBXQ8WY36 941 aaPredicted RBP12.25□□□□□ -0.45
SKA1-201ENST00000285116 NUP62CLQ9H1M0 184 aa12.25□□□□□ -0.45
SKA1-201ENST00000285116 CTNNA3Q9UI47 895 aa12.25□□□□□ -0.45
SKA1-201ENST00000285116 PROSER3Q2NL68 480 aa12.25□□□□□ -0.45
SKA1-201ENST00000285116 BICC1Q9H694 974 aaKnown RBP12.25□□□□□ -0.45
SKA1-201ENST00000285116 COPRSQ9NQ92 184 aa12.25□□□□□ -0.45
SKA1-201ENST00000285116 ATP5JP18859 108 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 LARP1Q6PKG0 1096 aaKnown RBP12.24□□□□□ -0.45
SKA1-201ENST00000285116 FAM227BQ96M60 508 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 MRVI1Q9Y6F6 885 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 COL18A1P39060 1754 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 KRT28Q7Z3Y7 464 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 CLSTN2Q9H4D0 955 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 PA2G4Q9UQ80 394 aaKnown RBP12.24□□□□□ -0.45
SKA1-201ENST00000285116 DDX60Q8IY21 1712 aaKnown RBP12.24□□□□□ -0.45
SKA1-201ENST00000285116 A0A0D9SFI3 127 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 CDC25BP30305 580 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 MPRIPQ6WCQ1 1025 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 CDC37L1Q7L3B6 337 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 TDRD7Q8NHU6 1098 aaKnown RBP12.24□□□□□ -0.45
SKA1-201ENST00000285116 STRN4Q9NRL3 753 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 DDX41Q9UJV9 622 aaKnown RBP12.24□□□□□ -0.45
SKA1-201ENST00000285116 PAXBP1Q9Y5B6 917 aa12.24□□□□□ -0.45
SKA1-201ENST00000285116 NUP188Q5SRE5 1749 aa12.23□□□□□ -0.45
SKA1-201ENST00000285116 VPS37CA5D8V6 355 aaPredicted RBP12.23□□□□□ -0.45
SKA1-201ENST00000285116 IGSF3O75054 1194 aa12.23□□□□□ -0.45
SKA1-201ENST00000285116 TAF5LO75529 589 aa12.23□□□□□ -0.45
SKA1-201ENST00000285116 TYRO3Q06418 890 aa12.23□□□□□ -0.45
SKA1-201ENST00000285116 CWF19L2Q2TBE0 894 aaKnown RBP12.23□□□□□ -0.45
SKA1-201ENST00000285116 LLPHQ9BRT6 129 aaKnown RBP12.23□□□□□ -0.45
SKA1-201ENST00000285116 ANXA1P04083 346 aa12.23□□□□□ -0.45
SKA1-201ENST00000285116 IGKV5-2P06315 115 aa12.23□□□□□ -0.45
SKA1-201ENST00000285116 PTGS1P23219 599 aa12.23□□□□□ -0.45
SKA1-201ENST00000285116 GTF2E1P29083 439 aaPredicted RBP12.23□□□□□ -0.45
SKA1-201ENST00000285116 ADAMTSL3P82987 1691 aa12.23□□□□□ -0.45
SKA1-201ENST00000285116 RABL6Q3YEC7 729 aaPredicted RBP12.23□□□□□ -0.45
SKA1-201ENST00000285116 GTF3C6Q969F1 213 aa12.23□□□□□ -0.45
SKA1-201ENST00000285116 MORC2Q9Y6X9 1032 aaPredicted RBP12.23□□□□□ -0.45
SKA1-201ENST00000285116 NEURL1BA8MQ27 555 aa12.22□□□□□ -0.45
SKA1-201ENST00000285116 PLA2G4DQ86XP0 818 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms