RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 ITPK1Q13572 414 aa11.59□□□□□ -0.55
TRIM55-201ENST00000276573 NEUROD6Q96NK8 337 aa11.59□□□□□ -0.55
TRIM55-201ENST00000276573 FSD1Q9BTV5 496 aa11.59□□□□□ -0.55
TRIM55-201ENST00000276573 SNRKQ9NRH2 765 aa11.59□□□□□ -0.55
TRIM55-201ENST00000276573 MCM4P33991 863 aa11.59□□□□□ -0.55
TRIM55-201ENST00000276573 PTH1RQ03431 593 aa11.59□□□□□ -0.55
TRIM55-201ENST00000276573 FAM227BQ96M60 508 aa11.59□□□□□ -0.55
TRIM55-201ENST00000276573 HAUS7Q99871 368 aa11.59□□□□□ -0.55
TRIM55-201ENST00000276573 CEP126Q9P2H0 1117 aa11.59□□□□□ -0.55
TRIM55-201ENST00000276573 TRMT112Q9UI30 125 aaKnown RBP11.59□□□□□ -0.55
TRIM55-201ENST00000276573 SNX14Q9Y5W7 946 aa11.59□□□□□ -0.55
TRIM55-201ENST00000276573 IRS4O14654 1257 aaPredicted RBP11.58□□□□□ -0.56
TRIM55-201ENST00000276573 IFIT5Q13325 482 aaKnown RBP11.58□□□□□ -0.56
TRIM55-201ENST00000276573 RAB3GAP1Q15042 981 aa11.58□□□□□ -0.56
TRIM55-201ENST00000276573 RASEFQ8IZ41 740 aa11.58□□□□□ -0.56
TRIM55-201ENST00000276573 TTLL11Q8NHH1 800 aa11.58□□□□□ -0.56
TRIM55-201ENST00000276573 EDC3Q96F86 508 aaKnown RBP11.58□□□□□ -0.56
TRIM55-201ENST00000276573 PALLDQ8WX93 1383 aa11.58□□□□□ -0.56
TRIM55-201ENST00000276573 KCNB2Q92953 911 aa11.58□□□□□ -0.56
TRIM55-201ENST00000276573 CWC22Q9HCG8 908 aaKnown RBP11.58□□□□□ -0.56
TRIM55-201ENST00000276573 SPATA31A6Q5VVP1 1343 aa11.57□□□□□ -0.56
TRIM55-201ENST00000276573 PDE8AO60658 829 aa11.57□□□□□ -0.56
TRIM55-201ENST00000276573 NECTIN1Q15223 517 aa11.57□□□□□ -0.56
TRIM55-201ENST00000276573 TAF7LQ5H9L4 462 aa11.57□□□□□ -0.56
TRIM55-201ENST00000276573 MAP4K1Q92918 833 aa11.57□□□□□ -0.56
TRIM55-201ENST00000276573 TNPO1Q92973 898 aaKnown RBP11.57□□□□□ -0.56
TRIM55-201ENST00000276573 TMX3Q96JJ7 454 aa11.57□□□□□ -0.56
TRIM55-201ENST00000276573 CCDC85AQ96PX6 553 aaPredicted RBP11.57□□□□□ -0.56
TRIM55-201ENST00000276573 USP21Q9UK80 565 aa11.57□□□□□ -0.56
TRIM55-201ENST00000276573 NUP98P52948 1817 aa11.57□□□□□ -0.56
TRIM55-201ENST00000276573 CCDC171Q6TFL3 1326 aa11.57□□□□□ -0.56
TRIM55-201ENST00000276573 A0A0D9SFI3 127 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 A0A1B0GUL7 405 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 CTSWP56202 376 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 UPF3BQ9BZI7 483 aaKnown RBP11.56□□□□□ -0.56
TRIM55-201ENST00000276573 AKAP2Q9Y2D5 859 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 RIPOR2Q9Y4F9 1068 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 UBN2Q6ZU65 1347 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 ANKRD36CQ5JPF3 1778 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 ANKRD18BA2A2Z9 1011 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 CAMTA2O94983 1202 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 ITGA6P23229 1130 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 CUL4AQ13619 759 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 SUSD4Q5VX71 490 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 DNAJC2Q99543 621 aaKnown RBP11.56□□□□□ -0.56
TRIM55-201ENST00000276573 NDUFB9Q9Y6M9 179 aa11.56□□□□□ -0.56
TRIM55-201ENST00000276573 PRPF40BQ6NWY9 871 aaKnown RBP11.55□□□□□ -0.56
TRIM55-201ENST00000276573 TICAM2Q86XR7 235 aa11.55□□□□□ -0.56
TRIM55-201ENST00000276573 KBTBD3Q8NAB2 608 aa11.55□□□□□ -0.56
TRIM55-201ENST00000276573 CERKQ8TCT0 537 aa11.55□□□□□ -0.56
TRIM55-201ENST00000276573 AK7Q96M32 723 aa11.55□□□□□ -0.56
TRIM55-201ENST00000276573 GREM2Q9H772 168 aa11.55□□□□□ -0.56
TRIM55-201ENST00000276573 RBM8AQ9Y5S9 174 aaKnown RBP11.55□□□□□ -0.56
TRIM55-201ENST00000276573 RFX7Q2KHR2 1363 aa11.55□□□□□ -0.56
TRIM55-201ENST00000276573 ZNF609O15014 1411 aa11.55□□□□□ -0.56
TRIM55-201ENST00000276573 CICQ96RK0 1608 aaPredicted RBP11.54□□□□□ -0.56
TRIM55-201ENST00000276573 RREB1Q92766 1687 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 NUCB2P80303 420 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 GSE1Q14687 1217 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 LDHAL6AQ6ZMR3 332 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 ZGPATQ8N5A5 531 aaKnown RBP11.54□□□□□ -0.56
TRIM55-201ENST00000276573 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.54□□□□□ -0.56
TRIM55-201ENST00000276573 TTC14Q96N46 770 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 TM6SF1Q9BZW5 370 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 MED23Q9ULK4 1368 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 TAF5LO75529 589 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 IFIT1P09914 478 aaKnown RBP11.54□□□□□ -0.56
TRIM55-201ENST00000276573 SSFA2P28290 1259 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 PARP10Q53GL7 1025 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 CREB3L3Q68CJ9 461 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 DDX46Q7L014 1031 aaKnown RBP11.54□□□□□ -0.56
TRIM55-201ENST00000276573 XAGE2Q96GT9 111 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 UTP14AQ9BVJ6 771 aaKnown RBP11.54□□□□□ -0.56
TRIM55-201ENST00000276573 PAG1Q9NWQ8 432 aa11.54□□□□□ -0.56
TRIM55-201ENST00000276573 KCNJ4P48050 445 aa11.53□□□□□ -0.56
TRIM55-201ENST00000276573 CCDC158Q5M9N0 1113 aa11.53□□□□□ -0.56
TRIM55-201ENST00000276573 CLEC17AQ6ZS10 378 aa11.53□□□□□ -0.56
TRIM55-201ENST00000276573 ZNF589Q86UQ0 364 aaPredicted RBP11.53□□□□□ -0.56
TRIM55-201ENST00000276573 LINC00116Q8NCU8 138 aa11.53□□□□□ -0.56
TRIM55-201ENST00000276573 INTS4Q96HW7 963 aaKnown RBP11.53□□□□□ -0.56
TRIM55-201ENST00000276573 GBP4Q96PP9 640 aa11.53□□□□□ -0.56
TRIM55-201ENST00000276573 ZSWIM6Q9HCJ5 1215 aa11.53□□□□□ -0.56
TRIM55-201ENST00000276573 SH3TC1Q8TE82 1336 aa11.53□□□□□ -0.56
TRIM55-201ENST00000276573 GOLIM4O00461 696 aa11.52□□□□□ -0.56
TRIM55-201ENST00000276573 SLC27A2O14975 620 aa11.52□□□□□ -0.56
TRIM55-201ENST00000276573 CYP2E1P05181 493 aaPredicted RBP11.52□□□□□ -0.56
TRIM55-201ENST00000276573 ZKSCAN1P17029 563 aaPredicted RBP11.52□□□□□ -0.56
TRIM55-201ENST00000276573 ADORA1P30542 326 aa11.52□□□□□ -0.56
TRIM55-201ENST00000276573 ADCK5Q3MIX3 580 aa11.52□□□□□ -0.56
TRIM55-201ENST00000276573 MCMDC2Q4G0Z9 681 aa11.52□□□□□ -0.56
TRIM55-201ENST00000276573 METTL24Q5JXM2 366 aa11.52□□□□□ -0.56
TRIM55-201ENST00000276573 GORABQ5T7V8 394 aa11.52□□□□□ -0.56
TRIM55-201ENST00000276573 PTF1AQ7RTS3 328 aa11.52□□□□□ -0.56
TRIM55-201ENST00000276573 MYH14Q7Z406 1995 aaKnown RBP11.52□□□□□ -0.56
TRIM55-201ENST00000276573 CNNM1Q9NRU3 951 aa11.52□□□□□ -0.56
TRIM55-201ENST00000276573 DDX11L8A8MPP1 907 aa11.52□□□□□ -0.57
TRIM55-201ENST00000276573 HCLS1P14317 486 aaPredicted RBP11.52□□□□□ -0.57
TRIM55-201ENST00000276573 CASTP20810 708 aaKnown RBP11.52□□□□□ -0.57
TRIM55-201ENST00000276573 TTC39AQ5SRH9 613 aa11.52□□□□□ -0.57
TRIM55-201ENST00000276573 USPL1Q5W0Q7 1092 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms