RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 TPM1P09493 284 aa13.55□□□□□ -0.24
CLSTN3-201ENST00000266546 USP48Q86UV5 1035 aa13.55□□□□□ -0.24
CLSTN3-201ENST00000266546 GIMAP6Q6P9H5 292 aa13.55□□□□□ -0.24
CLSTN3-201ENST00000266546 PLEKHM2Q8IWE5 1019 aa13.55□□□□□ -0.24
CLSTN3-201ENST00000266546 C8orf37Q96NL8 207 aa13.55□□□□□ -0.24
CLSTN3-201ENST00000266546 LARP6Q9BRS8 491 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-201ENST00000266546 USP26Q9BXU7 913 aa13.55□□□□□ -0.24
CLSTN3-201ENST00000266546 KCNQ3O43525 872 aa13.54□□□□□ -0.24
CLSTN3-201ENST00000266546 CKAP2LQ8IYA6 745 aa13.54□□□□□ -0.24
CLSTN3-201ENST00000266546 PLBD2Q8NHP8 589 aa13.54□□□□□ -0.24
CLSTN3-201ENST00000266546 CCP110O43303 1012 aa13.54□□□□□ -0.24
CLSTN3-201ENST00000266546 CCDC57Q2TAC2 916 aa13.54□□□□□ -0.24
CLSTN3-201ENST00000266546 HSP90B2PQ58FF3 399 aa13.54□□□□□ -0.24
CLSTN3-201ENST00000266546 METTL22Q9BUU2 404 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-201ENST00000266546 SCAND2PQ9GZW5 306 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-201ENST00000266546 SLIT3O75094 1523 aa13.54□□□□□ -0.24
CLSTN3-201ENST00000266546 GLRX3O76003 335 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-201ENST00000266546 NOM1Q5C9Z4 860 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 LMBRD1Q9NUN5 540 aa13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 AACSQ86V21 672 aa13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 CLIP2Q9UDT6 1046 aa13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 CFAP45Q9UL16 551 aa13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 FAM177BA6PVY3 158 aa13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 ME1P48163 572 aa13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 CEP57L1Q8IYX8 460 aa13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 KIF18AQ8NI77 898 aa13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 ZNF396Q96N95 335 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 RGPD8O14715 1765 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 CYP27B1O15528 508 aa13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 PDILTQ8N807 584 aa13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 GTPBP4Q9BZE4 634 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 SH2B1Q9NRF2 756 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-201ENST00000266546 PDE1AP54750 535 aa13.52□□□□□ -0.24
CLSTN3-201ENST00000266546 HOOK1Q9UJC3 728 aaKnown RBP13.52□□□□□ -0.25
CLSTN3-201ENST00000266546 CNPY2Q9Y2B0 182 aa13.52□□□□□ -0.25
CLSTN3-201ENST00000266546 ZSCAN22P10073 491 aaPredicted RBP13.52□□□□□ -0.25
CLSTN3-201ENST00000266546 TRIM29Q14134 588 aa13.52□□□□□ -0.25
CLSTN3-201ENST00000266546 PRPF40BQ6NWY9 871 aaKnown RBP13.52□□□□□ -0.25
CLSTN3-201ENST00000266546 DNAJC2Q99543 621 aaKnown RBP13.52□□□□□ -0.25
CLSTN3-201ENST00000266546 TOMM22Q9NS69 142 aa13.52□□□□□ -0.25
CLSTN3-201ENST00000266546 KIF2AO00139 706 aaPredicted RBP13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 PES1O00541 588 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 ZNF500O60304 480 aaPredicted RBP13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 ANAPC15P60006 121 aa13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 DHX8Q14562 1220 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 NFAT5O94916 1531 aa13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 STK38Q15208 465 aa13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 TSR1Q2NL82 804 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 OLFM4Q6UX06 510 aa13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 RHPN1Q8TCX5 695 aa13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 UBXN4Q92575 508 aa13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 ZBTB3Q9H5J0 574 aa13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 ESYT1Q9BSJ8 1104 aa13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 CEP126Q9P2H0 1117 aa13.51□□□□□ -0.25
CLSTN3-201ENST00000266546 UBE3BQ7Z3V4 1068 aa13.5□□□□□ -0.25
CLSTN3-201ENST00000266546 ACBD3Q9H3P7 528 aa13.5□□□□□ -0.25
CLSTN3-201ENST00000266546 GJB2P29033 226 aa13.5□□□□□ -0.25
CLSTN3-201ENST00000266546 ZNF165P49910 485 aa13.5□□□□□ -0.25
CLSTN3-201ENST00000266546 MAPK8IP2Q13387 824 aaPredicted RBP13.5□□□□□ -0.25
CLSTN3-201ENST00000266546 BEND3Q5T5X7 828 aa13.5□□□□□ -0.25
CLSTN3-201ENST00000266546 MYRIPQ8NFW9 859 aa13.5□□□□□ -0.25
CLSTN3-201ENST00000266546 DDX19AQ9NUU7 478 aaKnown RBP13.5□□□□□ -0.25
CLSTN3-201ENST00000266546 AK7Q96M32 723 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 USP44Q9H0E7 712 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 TMEM63CQ9P1W3 806 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 AKAP2Q9Y2D5 859 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 PAXBP1Q9Y5B6 917 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 CCDC186Q7Z3E2 898 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 CCDC191Q8NCU4 936 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 RASSF8Q8NHQ8 419 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 INTS4Q96HW7 963 aaKnown RBP13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 TRMT1Q9NXH9 659 aaKnown RBP13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 HEG1Q9ULI3 1381 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 ATP5J2-PTCD1G3V325 749 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 IGSF3O75054 1194 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 SERPINC1P01008 464 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 FAM177A1Q8N128 213 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 CALCOCO1Q9P1Z2 691 aa13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 TFIP11Q9UBB9 837 aaKnown RBP13.49□□□□□ -0.25
CLSTN3-201ENST00000266546 SETQ01105 290 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 TRDNQ13061 729 aa13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 TMCO3Q6UWJ1 677 aa13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 FAM200AQ8TCP9 573 aa13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 USP16Q9Y5T5 823 aa13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 CWF19L2Q2TBE0 894 aaKnown RBP13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 CCDC158Q5M9N0 1113 aa13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 LEKR1Q6ZMV7 388 aa13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 PIBF1Q8WXW3 757 aa13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 NEMFO60524 1076 aa13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 ECHDC1Q9NTX5 307 aa13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 ABCC6O95255 1503 aa13.48□□□□□ -0.25
CLSTN3-201ENST00000266546 SFPQP23246 707 aaKnown RBP eCLIP13.47□□□□□ -0.25
CLSTN3-201ENST00000266546 ATP6V1AP38606 617 aa13.47□□□□□ -0.25
CLSTN3-201ENST00000266546 CCDC70Q6NSX1 233 aa13.47□□□□□ -0.25
CLSTN3-201ENST00000266546 AOX1Q06278 1338 aa13.47□□□□□ -0.25
CLSTN3-201ENST00000266546 KDM4AO75164 1064 aa13.47□□□□□ -0.25
CLSTN3-201ENST00000266546 RALYLQ86SE5 291 aaKnown RBP13.47□□□□□ -0.25
CLSTN3-201ENST00000266546 SSH3Q8TE77 659 aa13.47□□□□□ -0.25
CLSTN3-201ENST00000266546 DDX11Q96FC9 970 aa13.47□□□□□ -0.25
CLSTN3-201ENST00000266546 CNNM1Q9NRU3 951 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms