RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 HMG20BQ9P0W2 317 aa13.44□□□□□ -0.26
MSH3-201ENST00000265081 SLC27A2O14975 620 aa13.44□□□□□ -0.26
MSH3-201ENST00000265081 LTBP4Q8N2S1 1624 aa13.43□□□□□ -0.26
MSH3-201ENST00000265081 ABCC12Q96J65 1359 aa13.43□□□□□ -0.26
MSH3-201ENST00000265081 KLHDC4Q8TBB5 520 aa13.43□□□□□ -0.26
MSH3-201ENST00000265081 PRDM11Q9NQV5 511 aa13.43□□□□□ -0.26
MSH3-201ENST00000265081 DDX49Q9Y6V7 483 aaKnown RBP13.43□□□□□ -0.26
MSH3-201ENST00000265081 PDIA4P13667 645 aaKnown RBP13.43□□□□□ -0.26
MSH3-201ENST00000265081 TFCP2Q12800 502 aa13.43□□□□□ -0.26
MSH3-201ENST00000265081 RBM8AQ9Y5S9 174 aaKnown RBP13.43□□□□□ -0.26
MSH3-201ENST00000265081 TAF5LO75529 589 aa13.43□□□□□ -0.26
MSH3-201ENST00000265081 MBD3O95983 291 aa13.43□□□□□ -0.26
MSH3-201ENST00000265081 KIAA1211Q6ZU35 1233 aa13.43□□□□□ -0.26
MSH3-201ENST00000265081 CCDC8Q9H0W5 538 aaPredicted RBP13.43□□□□□ -0.26
MSH3-201ENST00000265081 UBE3BQ7Z3V4 1068 aa13.42□□□□□ -0.26
MSH3-201ENST00000265081 LARGE1O95461 756 aa13.42□□□□□ -0.26
MSH3-201ENST00000265081 CWC25Q9NXE8 425 aaPredicted RBP13.42□□□□□ -0.26
MSH3-201ENST00000265081 A0A087WZG4 1122 aa13.42□□□□□ -0.26
MSH3-201ENST00000265081 TTLL7Q6ZT98 887 aa13.42□□□□□ -0.26
MSH3-201ENST00000265081 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.42□□□□□ -0.26
MSH3-201ENST00000265081 TOM1L2Q6ZVM7 507 aa13.41□□□□□ -0.26
MSH3-201ENST00000265081 RIC1Q4ADV7 1423 aa13.41□□□□□ -0.26
MSH3-201ENST00000265081 CASTP20810 708 aaKnown RBP13.41□□□□□ -0.26
MSH3-201ENST00000265081 PDLIM2Q96JY6 352 aa13.41□□□□□ -0.26
MSH3-201ENST00000265081 TMEM63CQ9P1W3 806 aa13.41□□□□□ -0.26
MSH3-201ENST00000265081 CDHR2Q9BYE9 1310 aa13.41□□□□□ -0.26
MSH3-201ENST00000265081 ZNF589Q86UQ0 364 aaPredicted RBP13.41□□□□□ -0.26
MSH3-201ENST00000265081 NSFL1CQ9UNZ2 370 aaKnown RBP13.41□□□□□ -0.26
MSH3-201ENST00000265081 ZSCAN22P10073 491 aaPredicted RBP13.4□□□□□ -0.26
MSH3-201ENST00000265081 PRPF40BQ6NWY9 871 aaKnown RBP13.4□□□□□ -0.26
MSH3-201ENST00000265081 C4AP0C0L4 1744 aa13.4□□□□□ -0.26
MSH3-201ENST00000265081 C4BP0C0L5 1744 aa13.4□□□□□ -0.26
MSH3-201ENST00000265081 CSF1RP07333 972 aa13.4□□□□□ -0.26
MSH3-201ENST00000265081 PDRG1Q9NUG6 133 aa13.4□□□□□ -0.26
MSH3-201ENST00000265081 LRSAM1Q6UWE0 723 aa13.4□□□□□ -0.26
MSH3-201ENST00000265081 RRAGDQ9NQL2 400 aaPredicted RBP13.4□□□□□ -0.26
MSH3-201ENST00000265081 CYP46A1Q9Y6A2 500 aa13.4□□□□□ -0.26
MSH3-201ENST00000265081 ATRNO75882 1429 aa13.4□□□□□ -0.27
MSH3-201ENST00000265081 PRPF40AO75400 957 aaKnown RBP13.39□□□□□ -0.27
MSH3-201ENST00000265081 RPS6KB1P23443 525 aa13.39□□□□□ -0.27
MSH3-201ENST00000265081 TEX13AQ9BXU3 409 aaPredicted RBP13.39□□□□□ -0.27
MSH3-201ENST00000265081 IL15P40933 162 aaPredicted RBP13.39□□□□□ -0.27
MSH3-201ENST00000265081 PIP4K2AP48426 406 aaPredicted RBP13.39□□□□□ -0.27
MSH3-201ENST00000265081 TOB2Q14106 344 aaPredicted RBP13.39□□□□□ -0.27
MSH3-201ENST00000265081 FBXL16Q8N461 479 aa13.39□□□□□ -0.27
MSH3-201ENST00000265081 PSMA5P28066 241 aa13.39□□□□□ -0.27
MSH3-201ENST00000265081 SIL1Q9H173 461 aa13.39□□□□□ -0.27
MSH3-201ENST00000265081 TIAM2Q8IVF5 1701 aa13.39□□□□□ -0.27
MSH3-201ENST00000265081 CCDC173Q0VFZ6 552 aa13.39□□□□□ -0.27
MSH3-201ENST00000265081 ME3Q16798 604 aa13.39□□□□□ -0.27
MSH3-201ENST00000265081 JAKMIP1Q96N16 626 aaKnown RBP13.39□□□□□ -0.27
MSH3-201ENST00000265081 AGXT2Q9BYV1 514 aa13.39□□□□□ -0.27
MSH3-201ENST00000265081 BOLA2Q9H3K6 86 aa13.39□□□□□ -0.27
MSH3-201ENST00000265081 SYT1P21579 422 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 COL9A3Q14050 684 aaPredicted RBP13.38□□□□□ -0.27
MSH3-201ENST00000265081 LMBR1LQ6UX01 489 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 KBTBD3Q8NAB2 608 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 ATP5J2-PTCD1G3V325 749 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 PTCD1O75127 700 aaKnown RBP13.38□□□□□ -0.27
MSH3-201ENST00000265081 A1BGP04217 495 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 TCIRG1Q13488 830 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 HELLSQ9NRZ9 838 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 TPCN1Q9ULQ1 816 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 STX6O43752 255 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 F13A1P00488 732 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 DBNDD2Q9BQY9 259 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 MTMR6Q9Y217 621 aa13.38□□□□□ -0.27
MSH3-201ENST00000265081 PCCAP05165 728 aaPredicted RBP13.37□□□□□ -0.27
MSH3-201ENST00000265081 ANKRD1Q15327 319 aa13.37□□□□□ -0.27
MSH3-201ENST00000265081 CAVIN1Q6NZI2 390 aaKnown RBP13.37□□□□□ -0.27
MSH3-201ENST00000265081 FSD1Q9BTV5 496 aa13.37□□□□□ -0.27
MSH3-201ENST00000265081 ECM29Q5VYK3 1845 aa13.37□□□□□ -0.27
MSH3-201ENST00000265081 EYA2O00167 538 aa13.37□□□□□ -0.27
MSH3-201ENST00000265081 ZKSCAN1P17029 563 aaPredicted RBP13.37□□□□□ -0.27
MSH3-201ENST00000265081 CLCN1P35523 988 aa13.37□□□□□ -0.27
MSH3-201ENST00000265081 HS1BP3Q53T59 392 aa13.37□□□□□ -0.27
MSH3-201ENST00000265081 CHAMP1Q96JM3 812 aa13.37□□□□□ -0.27
MSH3-201ENST00000265081 TAF6LQ9Y6J9 622 aa13.37□□□□□ -0.27
MSH3-201ENST00000265081 SCN7AQ01118 1682 aa13.36□□□□□ -0.27
MSH3-201ENST00000265081 RNF20Q5VTR2 975 aa13.36□□□□□ -0.27
MSH3-201ENST00000265081 PIGBQ92521 554 aa13.36□□□□□ -0.27
MSH3-201ENST00000265081 DSCC1Q9BVC3 393 aa13.36□□□□□ -0.27
MSH3-201ENST00000265081 KRT32Q14532 448 aa13.36□□□□□ -0.27
MSH3-201ENST00000265081 ZNF512BQ96KM6 892 aaPredicted RBP13.36□□□□□ -0.27
MSH3-201ENST00000265081 CPA1P15085 419 aa13.36□□□□□ -0.27
MSH3-201ENST00000265081 MCMDC2Q4G0Z9 681 aa13.36□□□□□ -0.27
MSH3-201ENST00000265081 ZMYM1Q5SVZ6 1142 aa13.36□□□□□ -0.27
MSH3-201ENST00000265081 RBSNQ9H1K0 784 aa13.36□□□□□ -0.27
MSH3-201ENST00000265081 U3KPZ7 1027 aaPredicted RBP13.35□□□□□ -0.27
MSH3-201ENST00000265081 MYO5AQ9Y4I1 1855 aaKnown RBP13.35□□□□□ -0.27
MSH3-201ENST00000265081 USP48Q86UV5 1035 aa13.35□□□□□ -0.27
MSH3-201ENST00000265081 MAP3K15Q6ZN16 1313 aa13.35□□□□□ -0.27
MSH3-201ENST00000265081 COL24A1Q17RW2 1714 aa13.35□□□□□ -0.27
MSH3-201ENST00000265081 NASPP49321 788 aaPredicted RBP13.35□□□□□ -0.27
MSH3-201ENST00000265081 PRIM1P49642 420 aaKnown RBP13.35□□□□□ -0.27
MSH3-201ENST00000265081 ELP1O95163 1332 aa13.35□□□□□ -0.27
MSH3-201ENST00000265081 ZBTB38Q8NAP3 1195 aaPredicted RBP13.34□□□□□ -0.27
MSH3-201ENST00000265081 GJB2P29033 226 aa13.34□□□□□ -0.27
MSH3-201ENST00000265081 SLC4A9Q96Q91 983 aa13.34□□□□□ -0.27
MSH3-201ENST00000265081 TMOD3Q9NYL9 352 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms