RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 POLR3AO14802 1390 aaPredicted RBP21.96■■□□□ 1.11
UPF1-201ENST00000262803 ZNF608Q9ULD9 1512 aaPredicted RBP21.96■■□□□ 1.11
UPF1-201ENST00000262803 SHTN1A0MZ66 631 aa21.96■■□□□ 1.11
UPF1-201ENST00000262803 GPTP24298 496 aa21.96■■□□□ 1.11
UPF1-201ENST00000262803 HAND2P61296 217 aa21.96■■□□□ 1.11
UPF1-201ENST00000262803 CCDC40Q4G0X9 1142 aa21.96■■□□□ 1.11
UPF1-201ENST00000262803 LRSAM1Q6UWE0 723 aa21.96■■□□□ 1.11
UPF1-201ENST00000262803 MTIF2P46199 727 aaKnown RBP21.96■■□□□ 1.11
UPF1-201ENST00000262803 PLVAPQ9BX97 442 aa21.96■■□□□ 1.11
UPF1-201ENST00000262803 GIGYF2Q6Y7W6 1299 aaKnown RBP21.96■■□□□ 1.11
UPF1-201ENST00000262803 ESYT1Q9BSJ8 1104 aa21.96■■□□□ 1.11
UPF1-201ENST00000262803 TNNQ9UQP3 1299 aa21.96■■□□□ 1.11
UPF1-201ENST00000262803 CBX1P83916 185 aa21.95■■□□□ 1.11
UPF1-201ENST00000262803 NBPF6Q5VWK0 638 aa21.95■■□□□ 1.11
UPF1-201ENST00000262803 NBPF5PQ86XG9 351 aaPredicted RBP21.95■■□□□ 1.11
UPF1-201ENST00000262803 DYDC1Q8WWB3 177 aa21.95■■□□□ 1.11
UPF1-201ENST00000262803 NBPF4Q96M43 638 aa21.95■■□□□ 1.11
UPF1-201ENST00000262803 SOS1Q07889 1333 aaPredicted RBP21.95■■□□□ 1.1
UPF1-201ENST00000262803 TBCAO75347 108 aaKnown RBP21.95■■□□□ 1.1
UPF1-201ENST00000262803 UBA7P41226 1012 aa21.95■■□□□ 1.1
UPF1-201ENST00000262803 METAP2P50579 478 aaKnown RBP eCLIP21.95■■□□□ 1.12e-6■■■■□ 22.1
UPF1-201ENST00000262803 PUS7Q96PZ0 661 aaKnown RBP21.95■■□□□ 1.1
UPF1-201ENST00000262803 GSTTP1A0A1W2PQM5 241 aa21.95■■□□□ 1.1
UPF1-201ENST00000262803 PPFIA3O75145 1194 aa21.95■■□□□ 1.1
UPF1-201ENST00000262803 TMC6Q7Z403 805 aa21.95■■□□□ 1.1
UPF1-201ENST00000262803 SNX21Q969T3 373 aa21.95■■□□□ 1.1
UPF1-201ENST00000262803 NUP88Q99567 741 aaPredicted RBP21.95■■□□□ 1.1
UPF1-201ENST00000262803 GIMAP6Q6P9H5 292 aa21.94■■□□□ 1.1
UPF1-201ENST00000262803 NECAB1Q8N987 351 aa21.94■■□□□ 1.1
UPF1-201ENST00000262803 PLCG2P16885 1265 aa21.94■■□□□ 1.1
UPF1-201ENST00000262803 CPLX3Q8WVH0 158 aa21.94■■□□□ 1.1
UPF1-201ENST00000262803 MAP2K1Q02750 393 aaPredicted RBP21.94■■□□□ 1.1
UPF1-201ENST00000262803 CCDC174Q6PII3 467 aa21.94■■□□□ 1.1
UPF1-201ENST00000262803 PEG3Q9GZU2 1588 aa21.94■■□□□ 1.1
UPF1-201ENST00000262803 RLBP1P12271 317 aa21.94■■□□□ 1.1
UPF1-201ENST00000262803 CTNNA2P26232 953 aa21.94■■□□□ 1.1
UPF1-201ENST00000262803 BRF1Q92994 677 aa21.93■■□□□ 1.1
UPF1-201ENST00000262803 TESK2Q96S53 571 aa21.93■■□□□ 1.1
UPF1-201ENST00000262803 TDRD12Q587J7 1177 aaKnown RBP21.93■■□□□ 1.1
UPF1-201ENST00000262803 MICU3Q86XE3 530 aa21.93■■□□□ 1.1
UPF1-201ENST00000262803 KIF4AO95239 1232 aa21.93■■□□□ 1.1
UPF1-201ENST00000262803 JARID2Q92833 1246 aaPredicted RBP21.93■■□□□ 1.1
UPF1-201ENST00000262803 CHPF2Q9P2E5 772 aa21.93■■□□□ 1.1
UPF1-201ENST00000262803 ESR2Q92731 530 aa21.93■■□□□ 1.1
UPF1-201ENST00000262803 PABPN1LA6NDY0 278 aaKnown RBP21.92■■□□□ 1.1
UPF1-201ENST00000262803 CALM1P0DP23 149 aa21.92■■□□□ 1.1
UPF1-201ENST00000262803 CALM2P0DP24 149 aa21.92■■□□□ 1.1
UPF1-201ENST00000262803 CALM3P0DP25 149 aa21.92■■□□□ 1.1
UPF1-201ENST00000262803 GNAT2P19087 354 aa21.92■■□□□ 1.1
UPF1-201ENST00000262803 ANKRD13DQ6ZTN6 518 aa21.92■■□□□ 1.1
UPF1-201ENST00000262803 ZCRB1Q8TBF4 217 aaKnown RBP21.92■■□□□ 1.1
UPF1-201ENST00000262803 UHRF1BP1LA0JNW5 1464 aa21.92■■□□□ 1.1
UPF1-201ENST00000262803 XRCC6P12956 609 aaKnown RBP eCLIP21.92■■□□□ 1.1
UPF1-201ENST00000262803 ZNF804AQ7Z570 1209 aa21.92■■□□□ 1.1
UPF1-201ENST00000262803 C16orf71Q8IYS4 520 aaPredicted RBP21.92■■□□□ 1.1
UPF1-201ENST00000262803 TTC12Q9H892 705 aaPredicted RBP21.92■■□□□ 1.1
UPF1-201ENST00000262803 CCDC144CPQ8IYA2 1237 aa21.92■■□□□ 1.1
UPF1-201ENST00000262803 ATP8B2P98198 1209 aa21.92■■□□□ 1.1
UPF1-201ENST00000262803 SPAG1Q07617 926 aa21.92■■□□□ 1.1
UPF1-201ENST00000262803 IFFO1Q0D2I5 559 aa21.92■■□□□ 1.1
UPF1-201ENST00000262803 CGNQ9P2M7 1197 aaKnown RBP21.92■■□□□ 1.1
UPF1-201ENST00000262803 CCDC102BQ68D86 513 aa21.91■■□□□ 1.1
UPF1-201ENST00000262803 MICALCLQ6ZW33 695 aa21.91■■□□□ 1.1
UPF1-201ENST00000262803 RAB11FIP4Q86YS3 637 aa21.91■■□□□ 1.1
UPF1-201ENST00000262803 PAXIP1Q6ZW49 1069 aaPredicted RBP21.91■■□□□ 1.1
UPF1-201ENST00000262803 SYCP3Q8IZU3 236 aa21.91■■□□□ 1.1
UPF1-201ENST00000262803 FAM107BQ9H098 131 aa21.91■■□□□ 1.1
UPF1-201ENST00000262803 TCEANC2Q96MN5 208 aa21.91■■□□□ 1.1
UPF1-201ENST00000262803 PANK2Q9BZ23 570 aa21.91■■□□□ 1.1
UPF1-201ENST00000262803 NF2P35240 595 aa21.91■■□□□ 1.1
UPF1-201ENST00000262803 CTAGE1Q96RT6 745 aa21.91■■□□□ 1.1
UPF1-201ENST00000262803 SETDB2Q96T68 719 aa21.91■■□□□ 1.1
UPF1-201ENST00000262803 PRPHP41219 470 aa21.9■■□□□ 1.1
UPF1-201ENST00000262803 IL15P40933 162 aaPredicted RBP21.9■■□□□ 1.1
UPF1-201ENST00000262803 SPDYE4A6NLX3 237 aa21.9■■□□□ 1.1
UPF1-201ENST00000262803 NLRP3Q96P20 1036 aa21.9■■□□□ 1.1
UPF1-201ENST00000262803 CNPY2Q9Y2B0 182 aa21.9■■□□□ 1.1
UPF1-201ENST00000262803 RBM8AQ9Y5S9 174 aaKnown RBP21.9■■□□□ 1.1
UPF1-201ENST00000262803 WTAPQ15007 396 aa21.9■■□□□ 1.1
UPF1-201ENST00000262803 AKAP4Q5JQC9 854 aa21.9■■□□□ 1.1
UPF1-201ENST00000262803 ZNF622Q969S3 477 aaKnown RBP eCLIP21.9■■□□□ 1.13e-7■■■□□ 15.5
UPF1-201ENST00000262803 ACTN2P35609 894 aa21.89■■□□□ 1.1
UPF1-201ENST00000262803 NAP1L4Q99733 375 aaKnown RBP21.89■■□□□ 1.1
UPF1-201ENST00000262803 POLKQ9UBT6 870 aa21.89■■□□□ 1.1
UPF1-201ENST00000262803 TSNARE1Q96NA8 513 aa21.89■■□□□ 1.1
UPF1-201ENST00000262803 DUOX2Q9NRD8 1548 aa21.89■■□□□ 1.09
UPF1-201ENST00000262803 OGFOD1Q8N543 542 aa21.89■■□□□ 1.09
UPF1-201ENST00000262803 BBXQ8WY36 941 aaPredicted RBP21.89■■□□□ 1.09
UPF1-201ENST00000262803 TBC1D5Q92609 795 aa21.89■■□□□ 1.09
UPF1-201ENST00000262803 TAF3Q5VWG9 929 aa21.88■■□□□ 1.09
UPF1-201ENST00000262803 ISM2Q6H9L7 571 aa21.88■■□□□ 1.09
UPF1-201ENST00000262803 USP48Q86UV5 1035 aa21.88■■□□□ 1.09
UPF1-201ENST00000262803 UTP14AQ9BVJ6 771 aaKnown RBP21.88■■□□□ 1.09
UPF1-201ENST00000262803 PRDM10Q9NQV6 1147 aa21.88■■□□□ 1.09
UPF1-201ENST00000262803 EXOC1Q9NV70 894 aa21.88■■□□□ 1.09
UPF1-201ENST00000262803 RBM25P49756 843 aaKnown RBP21.88■■□□□ 1.09
UPF1-201ENST00000262803 RTL9Q8NET4 1388 aa21.88■■□□□ 1.09
UPF1-201ENST00000262803 VAMP4O75379 141 aa21.88■■□□□ 1.09
UPF1-201ENST00000262803 DCTPP1Q9H773 170 aa21.87■■□□□ 1.09
UPF1-201ENST00000262803 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.87■■□□□ 1.097e-8■■□□□ 12.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms