RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 TTC14Q96N46 770 aa15.56■□□□□ 0.08
SPTLC1-201ENST00000262554 ARXQ96QS3 562 aa15.56■□□□□ 0.08
SPTLC1-201ENST00000262554 TM6SF1Q9BZW5 370 aa15.56■□□□□ 0.08
SPTLC1-201ENST00000262554 THRAP3Q9Y2W1 955 aaKnown RBP15.56■□□□□ 0.08
SPTLC1-201ENST00000262554 ANKRD36CQ5JPF3 1778 aa15.55■□□□□ 0.08
SPTLC1-201ENST00000262554 PCCAP05165 728 aaPredicted RBP15.55■□□□□ 0.08
SPTLC1-201ENST00000262554 CYP19A1P11511 503 aaPredicted RBP15.55■□□□□ 0.08
SPTLC1-201ENST00000262554 GIGYF2Q6Y7W6 1299 aaKnown RBP15.55■□□□□ 0.08
SPTLC1-201ENST00000262554 HAUS7Q99871 368 aa15.55■□□□□ 0.08
SPTLC1-201ENST00000262554 RBM8AQ9Y5S9 174 aaKnown RBP15.55■□□□□ 0.08
SPTLC1-201ENST00000262554 CCDC57Q2TAC2 916 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 HSP90AB3PQ58FF7 597 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 ZBTB38Q8NAP3 1195 aaPredicted RBP15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 NEUROD6Q96NK8 337 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 LIMCH1Q9UPQ0 1083 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 MED23Q9ULK4 1368 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 SPATA31A1Q5TZJ5 1347 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 GOLGA6L3A6NEY3 463 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 ADAMTS2O95450 1211 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 AK2P54819 239 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 RNF20Q5VTR2 975 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 CREB3L3Q68CJ9 461 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 MCTP1Q6DN14 999 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 JAKMIP1Q96N16 626 aaKnown RBP15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 DNAJC2Q99543 621 aaKnown RBP15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 PLA2G12BQ9BX93 195 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 FBXO3Q9UK99 471 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 ZDHHC9Q9Y397 364 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 CYP46A1Q9Y6A2 500 aa15.54■□□□□ 0.08
SPTLC1-201ENST00000262554 PRIM1P49642 420 aaKnown RBP15.53■□□□□ 0.08
SPTLC1-201ENST00000262554 VPS53Q5VIR6 699 aa15.53■□□□□ 0.08
SPTLC1-201ENST00000262554 EDC3Q96F86 508 aaKnown RBP15.53■□□□□ 0.08
SPTLC1-201ENST00000262554 ZNF594Q96JF6 807 aaPredicted RBP15.53■□□□□ 0.08
SPTLC1-201ENST00000262554 SLC4A9Q96Q91 983 aa15.53■□□□□ 0.08
SPTLC1-201ENST00000262554 ZSWIM6Q9HCJ5 1215 aa15.53■□□□□ 0.08
SPTLC1-201ENST00000262554 ZNF609O15014 1411 aa15.53■□□□□ 0.08
SPTLC1-201ENST00000262554 DDB1Q16531 1140 aa15.52■□□□□ 0.08
SPTLC1-201ENST00000262554 LRRC24Q50LG9 513 aa15.52■□□□□ 0.08
SPTLC1-201ENST00000262554 PDRG1Q9NUG6 133 aa15.52■□□□□ 0.08
SPTLC1-201ENST00000262554 CDHR2Q9BYE9 1310 aa15.52■□□□□ 0.08
SPTLC1-201ENST00000262554 NUP98P52948 1817 aa15.52■□□□□ 0.08
SPTLC1-201ENST00000262554 JCADQ9P266 1359 aa15.52■□□□□ 0.07
SPTLC1-201ENST00000262554 PSMA5P28066 241 aa15.52■□□□□ 0.07
SPTLC1-201ENST00000262554 FAM89AQ96GI7 184 aa15.52■□□□□ 0.07
SPTLC1-201ENST00000262554 CEP126Q9P2H0 1117 aa15.52■□□□□ 0.07
SPTLC1-201ENST00000262554 MYH3P11055 1940 aa15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 FSD2A1L4K1 749 aa15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 SLC27A2O14975 620 aa15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 BRD1O95696 1058 aa15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 KLHL40Q2TBA0 621 aa15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 ADCK5Q3MIX3 580 aa15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 RUFY3Q7L099 469 aa15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 TICAM2Q86XR7 235 aa15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 HMG20BQ9P0W2 317 aa15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 ISY1Q9ULR0 285 aaKnown RBP15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 DDX49Q9Y6V7 483 aaKnown RBP15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 NWD2Q9ULI1 1742 aa15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 SPEF2Q9C093 1822 aa15.51■□□□□ 0.07
SPTLC1-201ENST00000262554 SPDYE4A6NLX3 237 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 CSF1RP07333 972 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 IL6STP40189 918 aaPredicted RBP15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 TIMM10P62072 90 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 HLFQ16534 295 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 TAF7LQ5H9L4 462 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 ZNF589Q86UQ0 364 aaPredicted RBP15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 KBTBD3Q8NAB2 608 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 ZSCAN31Q96LW9 406 aaPredicted RBP15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 AKAP2Q9Y2D5 859 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 ZBTB1Q9Y2K1 713 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 CCDC9Q9Y3X0 531 aaKnown RBP15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 NDUFB9Q9Y6M9 179 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 PALLDQ8WX93 1383 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 A0A1B0GUL7 405 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 ERVV-1B6SEH8 477 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 TAF5LO75529 589 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 CPA1P15085 419 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 IFIT5Q13325 482 aaKnown RBP15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 DDX46Q7L014 1031 aaKnown RBP15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 NLRP10Q86W26 655 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 PUS3Q9BZE2 481 aaKnown RBP15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 PAG1Q9NWQ8 432 aa15.5■□□□□ 0.07
SPTLC1-201ENST00000262554 RPAP1Q9BWH6 1393 aaPredicted RBP15.49■□□□□ 0.07
SPTLC1-201ENST00000262554 GPTP24298 496 aa15.49■□□□□ 0.07
SPTLC1-201ENST00000262554 MCMDC2Q4G0Z9 681 aa15.49■□□□□ 0.07
SPTLC1-201ENST00000262554 SH2B1Q9NRF2 756 aaPredicted RBP15.49■□□□□ 0.07
SPTLC1-201ENST00000262554 NUTM2BA6NNL0 878 aaPredicted RBP15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 NUTM2EB1AL46 878 aaPredicted RBP15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 ABCB7O75027 752 aa15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 DZIP3Q86Y13 1208 aaKnown RBP15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 NUTM2AQ8IVF1 878 aaPredicted RBP15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 LMBRD1Q9NUN5 540 aa15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 SPATA31A5Q5VU36 1347 aa15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 SPATA31A7Q8IWB4 1347 aa15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 SH3TC1Q8TE82 1336 aa15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 WDR33Q9C0J8 1336 aaKnown RBP15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 GOLIM4O00461 696 aa15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 IFIT1P09914 478 aaKnown RBP15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 TSGA10IPQ3SY00 556 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms