RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 LARP1BQ659C4 914 aaKnown RBP19.57■□□□□ 0.72
HOXD3-201ENST00000249440 LRP10Q7Z4F1 713 aa19.57■□□□□ 0.72
HOXD3-201ENST00000249440 JCADQ9P266 1359 aa19.57■□□□□ 0.72
HOXD3-201ENST00000249440 PTMAP06454 111 aaKnown RBP19.57■□□□□ 0.72
HOXD3-201ENST00000249440 TSGA10IPQ3SY00 556 aa19.57■□□□□ 0.72
HOXD3-201ENST00000249440 RPS6KB1P23443 525 aa19.56■□□□□ 0.72
HOXD3-201ENST00000249440 PTPN12Q05209 780 aaKnown RBP19.56■□□□□ 0.72
HOXD3-201ENST00000249440 COL15A1P39059 1388 aa19.56■□□□□ 0.72
HOXD3-201ENST00000249440 RFX5P48382 616 aaPredicted RBP19.56■□□□□ 0.72
HOXD3-201ENST00000249440 RABL6Q3YEC7 729 aaPredicted RBP19.56■□□□□ 0.72
HOXD3-201ENST00000249440 TPRNQ4KMQ1 711 aa19.56■□□□□ 0.72
HOXD3-201ENST00000249440 TNNI3KQ59H18 835 aa19.56■□□□□ 0.72
HOXD3-201ENST00000249440 FPGT-TNNI3KV9GXZ4 949 aa19.56■□□□□ 0.72
HOXD3-201ENST00000249440 ZNF589Q86UQ0 364 aaPredicted RBP19.55■□□□□ 0.72
HOXD3-201ENST00000249440 DBNLQ9UJU6 430 aaKnown RBP19.55■□□□□ 0.72
HOXD3-201ENST00000249440 COL18A1P39060 1754 aa19.55■□□□□ 0.72
HOXD3-201ENST00000249440 KRT32Q14532 448 aa19.54■□□□□ 0.72
HOXD3-201ENST00000249440 TAF5LO75529 589 aa19.54■□□□□ 0.72
HOXD3-201ENST00000249440 TFCP2Q12800 502 aa19.54■□□□□ 0.72
HOXD3-201ENST00000249440 UBE3BQ7Z3V4 1068 aa19.54■□□□□ 0.72
HOXD3-201ENST00000249440 SPATA31A3Q5VYP0 1347 aa19.54■□□□□ 0.72
HOXD3-201ENST00000249440 ARFGEF2Q9Y6D5 1785 aa19.53■□□□□ 0.72
HOXD3-201ENST00000249440 CYP27B1O15528 508 aa19.53■□□□□ 0.72
HOXD3-201ENST00000249440 KRT85P78386 507 aa19.53■□□□□ 0.72
HOXD3-201ENST00000249440 USPL1Q5W0Q7 1092 aa19.53■□□□□ 0.72
HOXD3-201ENST00000249440 RFX7Q2KHR2 1363 aa19.53■□□□□ 0.72
HOXD3-201ENST00000249440 HCLS1P14317 486 aaPredicted RBP19.53■□□□□ 0.72
HOXD3-201ENST00000249440 SOS2Q07890 1332 aaPredicted RBP19.52■□□□□ 0.72
HOXD3-201ENST00000249440 A0A087WZG4 1122 aa19.52■□□□□ 0.72
HOXD3-201ENST00000249440 DTNBO60941 627 aa19.52■□□□□ 0.72
HOXD3-201ENST00000249440 PIP4K2AP48426 406 aaPredicted RBP19.52■□□□□ 0.72
HOXD3-201ENST00000249440 CABP4P57796 275 aa19.52■□□□□ 0.72
HOXD3-201ENST00000249440 JARID2Q92833 1246 aaPredicted RBP19.52■□□□□ 0.72
HOXD3-201ENST00000249440 EDC3Q96F86 508 aaKnown RBP19.52■□□□□ 0.72
HOXD3-201ENST00000249440 NHSL1Q5SYE7 1610 aa19.52■□□□□ 0.72
HOXD3-201ENST00000249440 RRP9O43818 475 aaKnown RBP19.52■□□□□ 0.71
HOXD3-201ENST00000249440 TOB2Q14106 344 aaPredicted RBP19.52■□□□□ 0.71
HOXD3-201ENST00000249440 PLBD2Q8NHP8 589 aa19.52■□□□□ 0.71
HOXD3-201ENST00000249440 TCEANC2Q96MN5 208 aa19.52■□□□□ 0.71
HOXD3-201ENST00000249440 USP25Q9UHP3 1055 aa19.52■□□□□ 0.71
HOXD3-201ENST00000249440 TNS3Q68CZ2 1445 aa19.51■□□□□ 0.71
HOXD3-201ENST00000249440 PKD1L3Q7Z443 1732 aa19.51■□□□□ 0.71
HOXD3-201ENST00000249440 COL9A3Q14050 684 aaPredicted RBP19.51■□□□□ 0.71
HOXD3-201ENST00000249440 HSP90AA2PQ14568 343 aaPredicted RBP19.51■□□□□ 0.71
HOXD3-201ENST00000249440 CDC37L1Q7L3B6 337 aa19.51■□□□□ 0.71
HOXD3-201ENST00000249440 FUCA2Q9BTY2 467 aa19.51■□□□□ 0.71
HOXD3-201ENST00000249440 TAF6LQ9Y6J9 622 aa19.51■□□□□ 0.71
HOXD3-201ENST00000249440 ELP1O95163 1332 aa19.5■□□□□ 0.71
HOXD3-201ENST00000249440 ATP5J2-PTCD1G3V325 749 aa19.5■□□□□ 0.71
HOXD3-201ENST00000249440 PTCD1O75127 700 aaKnown RBP19.5■□□□□ 0.71
HOXD3-201ENST00000249440 GIMAP6Q6P9H5 292 aa19.5■□□□□ 0.71
HOXD3-201ENST00000249440 R3HCC1Q9Y3T6 440 aaKnown RBP19.5■□□□□ 0.71
HOXD3-201ENST00000249440 U3KPZ7 1027 aaPredicted RBP19.5■□□□□ 0.71
HOXD3-201ENST00000249440 LAMB4A4D0S4 1761 aa19.49■□□□□ 0.71
HOXD3-201ENST00000249440 UBAP1LF5GYI3 381 aa19.49■□□□□ 0.71
HOXD3-201ENST00000249440 NEK1Q96PY6 1258 aa19.49■□□□□ 0.71
HOXD3-201ENST00000249440 DNAJC2Q99543 621 aaKnown RBP19.49■□□□□ 0.71
HOXD3-201ENST00000249440 HAUS7Q99871 368 aa19.49■□□□□ 0.71
HOXD3-201ENST00000249440 ADCY5O95622 1261 aa19.48■□□□□ 0.71
HOXD3-201ENST00000249440 KIAA2012Q0VF49 1180 aa19.48■□□□□ 0.71
HOXD3-201ENST00000249440 CHRNA2Q15822 529 aa19.48■□□□□ 0.71
HOXD3-201ENST00000249440 MCMDC2Q4G0Z9 681 aa19.48■□□□□ 0.71
HOXD3-201ENST00000249440 TTC6Q86TZ1 520 aa19.48■□□□□ 0.71
HOXD3-201ENST00000249440 FERMT3Q86UX7 667 aa19.48■□□□□ 0.71
HOXD3-201ENST00000249440 DBNDD2Q9BQY9 259 aa19.48■□□□□ 0.71
HOXD3-201ENST00000249440 SCAND2PQ9GZW5 306 aaPredicted RBP19.48■□□□□ 0.71
HOXD3-201ENST00000249440 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.48■□□□□ 0.71
HOXD3-201ENST00000249440 KDM4AO75164 1064 aa19.48■□□□□ 0.71
HOXD3-201ENST00000249440 CASP7P55210 303 aa19.48■□□□□ 0.71
HOXD3-201ENST00000249440 CCDC192P0DO97 292 aa19.47■□□□□ 0.71
HOXD3-201ENST00000249440 STK3Q13188 491 aa19.47■□□□□ 0.71
HOXD3-201ENST00000249440 LMBR1LQ6UX01 489 aa19.47■□□□□ 0.71
HOXD3-201ENST00000249440 NDUFB9Q9Y6M9 179 aa19.46■□□□□ 0.71
HOXD3-201ENST00000249440 ZNF609O15014 1411 aa19.46■□□□□ 0.71
HOXD3-201ENST00000249440 H7C1W4 665 aa19.45■□□□□ 0.7
HOXD3-201ENST00000249440 KBTBD3Q8NAB2 608 aa19.45■□□□□ 0.7
HOXD3-201ENST00000249440 GTF3C6Q969F1 213 aa19.45■□□□□ 0.7
HOXD3-201ENST00000249440 PARP4Q9UKK3 1724 aaKnown RBP19.45■□□□□ 0.7
HOXD3-201ENST00000249440 GOLGA6L4A6NEF3 574 aa19.45■□□□□ 0.7
HOXD3-201ENST00000249440 DDX46Q7L014 1031 aaKnown RBP19.45■□□□□ 0.7
HOXD3-201ENST00000249440 CHMP3Q9Y3E7 222 aa19.45■□□□□ 0.7
HOXD3-201ENST00000249440 CYP21A2P08686 494 aa19.44■□□□□ 0.7
HOXD3-201ENST00000249440 FAM173BQ6P4H8 233 aa19.44■□□□□ 0.7
HOXD3-201ENST00000249440 CCDC129Q6ZRS4 1044 aa19.44■□□□□ 0.7
HOXD3-201ENST00000249440 Q6ZUG5 572 aa19.44■□□□□ 0.7
HOXD3-201ENST00000249440 TICAM2Q86XR7 235 aa19.44■□□□□ 0.7
HOXD3-201ENST00000249440 CERKQ8TCT0 537 aa19.44■□□□□ 0.7
HOXD3-201ENST00000249440 SPATA32Q96LK8 384 aa19.44■□□□□ 0.7
HOXD3-201ENST00000249440 SEC62Q99442 399 aaKnown RBP19.44■□□□□ 0.7
HOXD3-201ENST00000249440 SH3TC1Q8TE82 1336 aa19.44■□□□□ 0.7
HOXD3-201ENST00000249440 CPDO75976 1380 aa19.44■□□□□ 0.7
HOXD3-201ENST00000249440 FOXO4P98177 505 aa19.43■□□□□ 0.7
HOXD3-201ENST00000249440 MAP3K11Q16584 847 aa19.43■□□□□ 0.7
HOXD3-201ENST00000249440 NUP62CLQ9H1M0 184 aa19.43■□□□□ 0.7
HOXD3-201ENST00000249440 GLI3P10071 1580 aa19.43■□□□□ 0.7
HOXD3-201ENST00000249440 HMGB1P09429 215 aaKnown RBP19.43■□□□□ 0.7
HOXD3-201ENST00000249440 GPR108Q9NPR9 543 aa19.43■□□□□ 0.7
HOXD3-201ENST00000249440 CWC25Q9NXE8 425 aaPredicted RBP19.43■□□□□ 0.7
HOXD3-201ENST00000249440 HSP90B1P14625 803 aaKnown RBP19.42■□□□□ 0.7
HOXD3-201ENST00000249440 NEUROD6Q96NK8 337 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms