RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 RRAGCQ9HB90 399 aa10.7□□□□□ -0.7
VPS4B-201ENST00000238497 ZNF277Q9NRM2 450 aaPredicted RBP10.7□□□□□ -0.7
VPS4B-201ENST00000238497 IL16Q14005 1332 aa10.7□□□□□ -0.7
VPS4B-201ENST00000238497 CEP350Q5VT06 3117 aa10.7□□□□□ -0.7
VPS4B-201ENST00000238497 API5Q9BZZ5 524 aaKnown RBP10.69□□□□□ -0.7
VPS4B-201ENST00000238497 DDX58O95786 925 aaKnown RBP10.69□□□□□ -0.7
VPS4B-201ENST00000238497 HOXB7P09629 217 aa10.69□□□□□ -0.7
VPS4B-201ENST00000238497 BECN1Q14457 450 aa10.69□□□□□ -0.7
VPS4B-201ENST00000238497 ALDH1L2Q3SY69 923 aa10.69□□□□□ -0.7
VPS4B-201ENST00000238497 DPY19L2Q6NUT2 758 aa10.69□□□□□ -0.7
VPS4B-201ENST00000238497 NLRP10Q86W26 655 aa10.69□□□□□ -0.7
VPS4B-201ENST00000238497 PLBD2Q8NHP8 589 aa10.69□□□□□ -0.7
VPS4B-201ENST00000238497 ZNF853P0CG23 659 aa10.69□□□□□ -0.7
VPS4B-201ENST00000238497 RBM17Q96I25 401 aaKnown RBP10.69□□□□□ -0.7
VPS4B-201ENST00000238497 MEIS3Q99687 375 aa10.69□□□□□ -0.7
VPS4B-201ENST00000238497 SH3TC1Q8TE82 1336 aa10.69□□□□□ -0.7
VPS4B-201ENST00000238497 NTSR2O95665 410 aa10.68□□□□□ -0.7
VPS4B-201ENST00000238497 SOGA3Q5TF21 947 aa10.68□□□□□ -0.7
VPS4B-201ENST00000238497 CHD1LQ86WJ1 897 aa10.68□□□□□ -0.7
VPS4B-201ENST00000238497 CHMP4AQ9BY43 222 aa10.68□□□□□ -0.7
VPS4B-201ENST00000238497 AFDNP55196 1824 aaKnown RBP10.68□□□□□ -0.7
VPS4B-201ENST00000238497 ZBTB7BO15156 539 aaPredicted RBP10.68□□□□□ -0.7
VPS4B-201ENST00000238497 TSHZ3Q63HK5 1081 aa10.68□□□□□ -0.7
VPS4B-201ENST00000238497 C3orf67Q6ZVT6 689 aa10.68□□□□□ -0.7
VPS4B-201ENST00000238497 DDX46Q7L014 1031 aaKnown RBP10.68□□□□□ -0.7
VPS4B-201ENST00000238497 FRAT2O75474 233 aaPredicted RBP10.68□□□□□ -0.7
VPS4B-201ENST00000238497 LRP10Q7Z4F1 713 aa10.67□□□□□ -0.7
VPS4B-201ENST00000238497 NFKBIBQ15653 356 aa10.67□□□□□ -0.7
VPS4B-201ENST00000238497 C22orf23Q9BZE7 217 aa10.67□□□□□ -0.7
VPS4B-201ENST00000238497 PI4KAP2A4QPH2 592 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 NEXNQ0ZGT2 675 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 PI4KAP1Q8N8J0 262 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 JDP2Q8WYK2 163 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 EXOC6BQ9Y2D4 811 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 MAP3K2Q9Y2U5 619 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 KDM3BQ7LBC6 1761 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 PPEF1O14829 653 aaPredicted RBP10.66□□□□□ -0.7
VPS4B-201ENST00000238497 RGL2O15211 777 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 PRELPP51888 382 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 SLC51AQ86UW1 340 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 RTKN2Q8IZC4 609 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 LARGE2Q8N3Y3 721 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 OTUD7AQ8TE49 926 aaPredicted RBP10.66□□□□□ -0.7
VPS4B-201ENST00000238497 GJA3Q9Y6H8 435 aa10.66□□□□□ -0.7
VPS4B-201ENST00000238497 IRS4O14654 1257 aaPredicted RBP10.65□□□□□ -0.7
VPS4B-201ENST00000238497 RTN4Q9NQC3 1192 aaKnown RBP10.65□□□□□ -0.7
VPS4B-201ENST00000238497 SCN7AQ01118 1682 aa10.65□□□□□ -0.7
VPS4B-201ENST00000238497 KIF3CO14782 793 aa10.65□□□□□ -0.7
VPS4B-201ENST00000238497 DDNO94850 711 aaPredicted RBP10.65□□□□□ -0.7
VPS4B-201ENST00000238497 GZF1Q9H116 711 aaPredicted RBP10.65□□□□□ -0.7
VPS4B-201ENST00000238497 TPRNQ4KMQ1 711 aa10.64□□□□□ -0.71
VPS4B-201ENST00000238497 CHMP4BQ9H444 224 aaKnown RBP10.64□□□□□ -0.71
VPS4B-201ENST00000238497 ADCY9O60503 1353 aa10.64□□□□□ -0.71
VPS4B-201ENST00000238497 GLTPD2A6NH11 291 aa10.64□□□□□ -0.71
VPS4B-201ENST00000238497 VEGFAP15692 232 aaPredicted RBP10.64□□□□□ -0.71
VPS4B-201ENST00000238497 FKBP4Q02790 459 aaKnown RBP eCLIP10.64□□□□□ -0.71
VPS4B-201ENST00000238497 NOL8Q76FK4 1167 aaKnown RBP10.64□□□□□ -0.71
VPS4B-201ENST00000238497 SIRT2Q8IXJ6 389 aa10.64□□□□□ -0.71
VPS4B-201ENST00000238497 CWC25Q9NXE8 425 aaPredicted RBP10.64□□□□□ -0.71
VPS4B-201ENST00000238497 PPIP5K2O43314 1243 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 TOMM70O94826 608 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 EAPPQ56P03 285 aaPredicted RBP10.63□□□□□ -0.71
VPS4B-201ENST00000238497 NSFL1CQ9UNZ2 370 aaKnown RBP10.63□□□□□ -0.71
VPS4B-201ENST00000238497 CLEC11AQ9Y240 323 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 KIF13BQ9NQT8 1826 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 TRIM6-TRIM34B2RNG4 842 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 OS9Q13438 667 aaPredicted RBP10.63□□□□□ -0.71
VPS4B-201ENST00000238497 HDAC1Q13547 482 aaPredicted RBP10.63□□□□□ -0.71
VPS4B-201ENST00000238497 CWF19L2Q2TBE0 894 aaKnown RBP10.63□□□□□ -0.71
VPS4B-201ENST00000238497 CRY2Q49AN0 593 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 DPP8Q6V1X1 898 aaPredicted RBP10.63□□□□□ -0.71
VPS4B-201ENST00000238497 ABCC4O15439 1325 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 KLRG2A4D1S0 409 aaPredicted RBP10.63□□□□□ -0.71
VPS4B-201ENST00000238497 C6orf229H3BNL8 230 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 IARSP41252 1262 aaKnown RBP10.63□□□□□ -0.71
VPS4B-201ENST00000238497 FLIIQ13045 1269 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 RILPL2Q969X0 211 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 CRAMP1Q96RY5 1269 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 ISCA1Q9BUE6 129 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 IL1RAPL2Q9NP60 686 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 CHMP3Q9Y3E7 222 aa10.63□□□□□ -0.71
VPS4B-201ENST00000238497 G3V3G9 751 aa10.62□□□□□ -0.71
VPS4B-201ENST00000238497 NUCB1Q02818 461 aa10.62□□□□□ -0.71
VPS4B-201ENST00000238497 AAMPQ13685 434 aa10.62□□□□□ -0.71
VPS4B-201ENST00000238497 DCAF8Q5TAQ9 597 aa10.62□□□□□ -0.71
VPS4B-201ENST00000238497 KSR2Q6VAB6 950 aa10.62□□□□□ -0.71
VPS4B-201ENST00000238497 SMC5Q8IY18 1101 aa10.62□□□□□ -0.71
VPS4B-201ENST00000238497 LAMB4A4D0S4 1761 aa10.62□□□□□ -0.71
VPS4B-201ENST00000238497 SLX4Q8IY92 1834 aa10.62□□□□□ -0.71
VPS4B-201ENST00000238497 MAP4K4O95819 1239 aaPredicted RBP10.62□□□□□ -0.71
VPS4B-201ENST00000238497 EIF6P56537 245 aaKnown RBP10.62□□□□□ -0.71
VPS4B-201ENST00000238497 MPNDQ8N594 471 aa10.62□□□□□ -0.71
VPS4B-201ENST00000238497 C7orf43Q8WVR3 580 aa10.62□□□□□ -0.71
VPS4B-201ENST00000238497 METTL22Q9BUU2 404 aaPredicted RBP10.62□□□□□ -0.71
VPS4B-201ENST00000238497 HOXA10P31260 410 aaPredicted RBP10.61□□□□□ -0.71
VPS4B-201ENST00000238497 CC2D2BQ6DHV5 1058 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 NUP98P52948 1817 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 RIMBP2O15034 1052 aa10.61□□□□□ -0.71
VPS4B-201ENST00000238497 HSP90B1P14625 803 aaKnown RBP10.61□□□□□ -0.71
VPS4B-201ENST00000238497 SLC10A5Q5PT55 438 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms