RNA–Protein interactions for RNA: ENST00000218388.8

TIMP1-201, Transcript of TIMP metallopeptidase inhibitor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP1, Length 892 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP1-201ENST00000218388 CRY2Q49AN0 593 aa16.46■□□□□ 0.23
TIMP1-201ENST00000218388 C2CD5Q86YS7 1000 aa16.46■□□□□ 0.23
TIMP1-201ENST00000218388 CSF1RP07333 972 aa16.45■□□□□ 0.22
TIMP1-201ENST00000218388 NPR1P16066 1061 aa16.45■□□□□ 0.22
TIMP1-201ENST00000218388 LMBR1LQ6UX01 489 aa16.45■□□□□ 0.22
TIMP1-201ENST00000218388 DDX46Q7L014 1031 aaKnown RBP16.45■□□□□ 0.22
TIMP1-201ENST00000218388 TTLL11Q8NHH1 800 aa16.45■□□□□ 0.22
TIMP1-201ENST00000218388 EXOC6Q8TAG9 804 aa16.45■□□□□ 0.22
TIMP1-201ENST00000218388 MASTLQ96GX5 879 aa16.45■□□□□ 0.22
TIMP1-201ENST00000218388 RBM17Q96I25 401 aaKnown RBP16.45■□□□□ 0.22
TIMP1-201ENST00000218388 KAZALD1Q96I82 304 aa16.45■□□□□ 0.22
TIMP1-201ENST00000218388 C1orf115Q9H7X2 142 aa16.45■□□□□ 0.22
TIMP1-201ENST00000218388 RTL9Q8NET4 1388 aa16.45■□□□□ 0.22
TIMP1-201ENST00000218388 COL11A2P13942 1736 aaPredicted RBP16.45■□□□□ 0.22
TIMP1-201ENST00000218388 DLEC1Q9Y238 1755 aa16.44■□□□□ 0.22
TIMP1-201ENST00000218388 SRGNP10124 158 aa16.44■□□□□ 0.22
TIMP1-201ENST00000218388 CCDC57Q2TAC2 916 aa16.44■□□□□ 0.22
TIMP1-201ENST00000218388 EPHA10Q5JZY3 1008 aa16.44■□□□□ 0.22
TIMP1-201ENST00000218388 ANKRD44Q8N8A2 993 aa16.44■□□□□ 0.22
TIMP1-201ENST00000218388 ANKRD18BA2A2Z9 1011 aa16.43■□□□□ 0.22
TIMP1-201ENST00000218388 ALDH1B1P30837 517 aa16.43■□□□□ 0.22
TIMP1-201ENST00000218388 IFIT5Q13325 482 aaKnown RBP16.43■□□□□ 0.22
TIMP1-201ENST00000218388 MTX1Q13505 466 aa16.43■□□□□ 0.22
TIMP1-201ENST00000218388 STYK1Q6J9G0 422 aa16.43■□□□□ 0.22
TIMP1-201ENST00000218388 C3orf67Q6ZVT6 689 aa16.43■□□□□ 0.22
TIMP1-201ENST00000218388 RPAP2Q8IXW5 612 aaPredicted RBP16.43■□□□□ 0.22
TIMP1-201ENST00000218388 CCDC85AQ96PX6 553 aaPredicted RBP16.43■□□□□ 0.22
TIMP1-201ENST00000218388 CDC5LQ99459 802 aaKnown RBP16.43■□□□□ 0.22
TIMP1-201ENST00000218388 SRGAP3O43295 1099 aa16.42■□□□□ 0.22
TIMP1-201ENST00000218388 HMMRO75330 724 aa16.42■□□□□ 0.22
TIMP1-201ENST00000218388 ITGA6P23229 1130 aa16.42■□□□□ 0.22
TIMP1-201ENST00000218388 HOXA10P31260 410 aaPredicted RBP16.42■□□□□ 0.22
TIMP1-201ENST00000218388 FAM161AQ3B820 660 aa16.42■□□□□ 0.22
TIMP1-201ENST00000218388 TAF7LQ5H9L4 462 aa16.42■□□□□ 0.22
TIMP1-201ENST00000218388 CNKSR1Q969H4 720 aa16.42■□□□□ 0.22
TIMP1-201ENST00000218388 ZNF622Q969S3 477 aaKnown RBP eCLIP16.42■□□□□ 0.22
TIMP1-201ENST00000218388 CRAMP1Q96RY5 1269 aa16.42■□□□□ 0.22
TIMP1-201ENST00000218388 FHDC1Q9C0D6 1143 aaPredicted RBP16.42■□□□□ 0.22
TIMP1-201ENST00000218388 GREM2Q9H772 168 aa16.42■□□□□ 0.22
TIMP1-201ENST00000218388 CHRNA5P30532 468 aa16.41■□□□□ 0.22
TIMP1-201ENST00000218388 ATP8B2P98198 1209 aa16.41■□□□□ 0.22
TIMP1-201ENST00000218388 CEP85Q6P2H3 762 aa16.41■□□□□ 0.22
TIMP1-201ENST00000218388 KIAA1551Q9HCM1 1747 aa16.41■□□□□ 0.22
TIMP1-201ENST00000218388 DPEP1P16444 411 aa16.4■□□□□ 0.22
TIMP1-201ENST00000218388 IGHMBP2P38935 993 aaKnown RBP16.4■□□□□ 0.22
TIMP1-201ENST00000218388 GRAPQ13588 217 aa16.4■□□□□ 0.22
TIMP1-201ENST00000218388 ANKRD18AQ8IVF6 992 aa16.4■□□□□ 0.22
TIMP1-201ENST00000218388 GRAPLQ8TC17 118 aaPredicted RBP16.4■□□□□ 0.22
TIMP1-201ENST00000218388 CACNA1SQ13698 1873 aa16.39■□□□□ 0.22
TIMP1-201ENST00000218388 A0A0G2JLW4 131 aa16.39■□□□□ 0.21
TIMP1-201ENST00000218388 ERICH6BQ5W0A0 696 aa16.39■□□□□ 0.21
TIMP1-201ENST00000218388 TMC4Q7Z404 712 aa16.39■□□□□ 0.21
TIMP1-201ENST00000218388 MPHOSPH8Q99549 860 aa16.39■□□□□ 0.21
TIMP1-201ENST00000218388 SEC31BQ9NQW1 1179 aa16.39■□□□□ 0.21
TIMP1-201ENST00000218388 PIM2Q9P1W9 311 aa16.39■□□□□ 0.21
TIMP1-201ENST00000218388 BBOX1O75936 387 aa16.38■□□□□ 0.21
TIMP1-201ENST00000218388 TTLL6Q8N841 843 aa16.38■□□□□ 0.21
TIMP1-201ENST00000218388 SSH3Q8TE77 659 aa16.38■□□□□ 0.21
TIMP1-201ENST00000218388 SYT17Q9BSW7 474 aa16.38■□□□□ 0.21
TIMP1-201ENST00000218388 TMX4Q9H1E5 349 aaPredicted RBP16.38■□□□□ 0.21
TIMP1-201ENST00000218388 SPEF2Q9C093 1822 aa16.38■□□□□ 0.21
TIMP1-201ENST00000218388 BRCA1P38398 1863 aaKnown RBP16.37■□□□□ 0.21
TIMP1-201ENST00000218388 PNMA6EA0A0J9YXQ4 647 aa16.37■□□□□ 0.21
TIMP1-201ENST00000218388 RPS8P62241 208 aaKnown RBP16.37■□□□□ 0.21
TIMP1-201ENST00000218388 POLA2Q14181 598 aa16.37■□□□□ 0.21
TIMP1-201ENST00000218388 FBXO3Q9UK99 471 aa16.37■□□□□ 0.21
TIMP1-201ENST00000218388 TAF1P21675 1872 aa16.37■□□□□ 0.21
TIMP1-201ENST00000218388 PPEF1O14829 653 aaPredicted RBP16.36■□□□□ 0.21
TIMP1-201ENST00000218388 DALRD3Q5D0E6 543 aaKnown RBP16.36■□□□□ 0.21
TIMP1-201ENST00000218388 PRPF40BQ6NWY9 871 aaKnown RBP16.36■□□□□ 0.21
TIMP1-201ENST00000218388 NLGN2Q8NFZ4 835 aa16.36■□□□□ 0.21
TIMP1-201ENST00000218388 CELF1Q92879 486 aaKnown RBP16.36■□□□□ 0.21
TIMP1-201ENST00000218388 KCNA3P22001 575 aa16.35■□□□□ 0.21
TIMP1-201ENST00000218388 RFX5P48382 616 aaPredicted RBP16.35■□□□□ 0.21
TIMP1-201ENST00000218388 LDHAL6AQ6ZMR3 332 aa16.35■□□□□ 0.21
TIMP1-201ENST00000218388 COPRSQ9NQ92 184 aa16.35■□□□□ 0.21
TIMP1-201ENST00000218388 CNNM1Q9NRU3 951 aa16.35■□□□□ 0.21
TIMP1-201ENST00000218388 BSDC1Q9NW68 430 aaPredicted RBP16.35■□□□□ 0.21
TIMP1-201ENST00000218388 PCDHB15Q9Y5E8 787 aa16.35■□□□□ 0.21
TIMP1-201ENST00000218388 SLX4Q8IY92 1834 aa16.34■□□□□ 0.21
TIMP1-201ENST00000218388 PTPN12Q05209 780 aaKnown RBP16.34■□□□□ 0.21
TIMP1-201ENST00000218388 HSP90AB4PQ58FF6 505 aa16.34■□□□□ 0.21
TIMP1-201ENST00000218388 SOGA3Q5TF21 947 aa16.34■□□□□ 0.21
TIMP1-201ENST00000218388 ZNF594Q96JF6 807 aaPredicted RBP16.34■□□□□ 0.21
TIMP1-201ENST00000218388 RWDD1Q9H446 243 aaPredicted RBP16.34■□□□□ 0.21
TIMP1-201ENST00000218388 EYA2O00167 538 aa16.33■□□□□ 0.2
TIMP1-201ENST00000218388 CIAO1O76071 339 aa16.33■□□□□ 0.2
TIMP1-201ENST00000218388 G3BP1Q13283 466 aaKnown RBP eCLIP16.33■□□□□ 0.2
TIMP1-201ENST00000218388 OS9Q13438 667 aaPredicted RBP16.33■□□□□ 0.2
TIMP1-201ENST00000218388 HDAC1Q13547 482 aaPredicted RBP16.33■□□□□ 0.2
TIMP1-201ENST00000218388 CC2D2BQ6DHV5 1058 aa16.33■□□□□ 0.2
TIMP1-201ENST00000218388 SIRT2Q8IXJ6 389 aa16.33■□□□□ 0.2
TIMP1-201ENST00000218388 KLHDC4Q8TBB5 520 aa16.33■□□□□ 0.2
TIMP1-201ENST00000218388 LRRC37AA6NMS7 1700 aa16.32■□□□□ 0.2
TIMP1-201ENST00000218388 SURF6O75683 361 aaKnown RBP16.32■□□□□ 0.2
TIMP1-201ENST00000218388 IL15P40933 162 aaPredicted RBP16.32■□□□□ 0.2
TIMP1-201ENST00000218388 GRIPAP1Q4V328 841 aa16.32■□□□□ 0.2
TIMP1-201ENST00000218388 ERC1Q8IUD2 1116 aa16.32■□□□□ 0.2
TIMP1-201ENST00000218388 SP8Q8IXZ3 490 aa16.32■□□□□ 0.2
TIMP1-201ENST00000218388 SIL1Q9H173 461 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms