RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 TRIM47Q96LD4 638 aa15.55■□□□□ 0.08
SF3A1-201ENST00000215793 AKR1B10O60218 316 aa15.55■□□□□ 0.08
SF3A1-201ENST00000215793 NOP2P46087 812 aaKnown RBP15.55■□□□□ 0.08
SF3A1-201ENST00000215793 GNG11P61952 73 aa15.55■□□□□ 0.08
SF3A1-201ENST00000215793 WDR78Q5VTH9 848 aa15.55■□□□□ 0.08
SF3A1-201ENST00000215793 STX8Q9UNK0 236 aa15.55■□□□□ 0.08
SF3A1-201ENST00000215793 CCDC175P0C221 793 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 ZSCAN23Q3MJ62 389 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 ERMNQ8TAM6 284 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 PKNOX2Q96KN3 472 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 ESYT1Q9BSJ8 1104 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 CALCOCO1Q9P1Z2 691 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 CCDC171Q6TFL3 1326 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 IL15P40933 162 aaPredicted RBP15.54■□□□□ 0.08
SF3A1-201ENST00000215793 ATP8B2P98198 1209 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 ATP2B3Q16720 1220 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 SYCP3Q8IZU3 236 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 MCMDC2Q4G0Z9 681 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 EXOC1Q9NV70 894 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.54■□□□□ 0.082e-7■■□□□ 12.5
SF3A1-201ENST00000215793 RBM8AQ9Y5S9 174 aaKnown RBP15.54■□□□□ 0.08
SF3A1-201ENST00000215793 GRIN2AQ12879 1464 aa15.54■□□□□ 0.08
SF3A1-201ENST00000215793 GRM8O00222 908 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 TBCAO75347 108 aaKnown RBP15.53■□□□□ 0.08
SF3A1-201ENST00000215793 ANXA1P04083 346 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 ZGPATQ8N5A5 531 aaKnown RBP15.53■□□□□ 0.08
SF3A1-201ENST00000215793 IBSPP21815 317 aaPredicted RBP15.53■□□□□ 0.08
SF3A1-201ENST00000215793 BMS1Q14692 1282 aaKnown RBP15.53■□□□□ 0.08
SF3A1-201ENST00000215793 MRPS27Q92552 414 aaKnown RBP15.53■□□□□ 0.08
SF3A1-201ENST00000215793 ALG1Q9BT22 464 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 PRC1O43663 620 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 KSR2Q6VAB6 950 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 FAM200AQ8TCP9 573 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 CHPF2Q9P2E5 772 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 RBM27Q9P2N5 1060 aaKnown RBP15.53■□□□□ 0.08
SF3A1-201ENST00000215793 STAMBPO95630 424 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 UBASH3AP57075 661 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 CEP135Q66GS9 1140 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 GIMAP6Q6P9H5 292 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 JADE2Q9NQC1 790 aa15.53■□□□□ 0.08
SF3A1-201ENST00000215793 BCCIPQ9P287 314 aaKnown RBP eCLIP15.53■□□□□ 0.08
SF3A1-201ENST00000215793 POLR3GO15318 223 aaPredicted RBP15.52■□□□□ 0.08
SF3A1-201ENST00000215793 PLVAPQ9BX97 442 aa15.52■□□□□ 0.08
SF3A1-201ENST00000215793 PCDHB15Q9Y5E8 787 aa15.52■□□□□ 0.08
SF3A1-201ENST00000215793 CEBPAP49715 358 aaPredicted RBP15.52■□□□□ 0.08
SF3A1-201ENST00000215793 NECAB1Q8N987 351 aa15.52■□□□□ 0.08
SF3A1-201ENST00000215793 XAGE3Q8WTP9 111 aa15.52■□□□□ 0.08
SF3A1-201ENST00000215793 PRPF4BQ13523 1007 aaKnown RBP15.52■□□□□ 0.07
SF3A1-201ENST00000215793 CTR9Q6PD62 1173 aa15.52■□□□□ 0.07
SF3A1-201ENST00000215793 SNX21Q969T3 373 aa15.52■□□□□ 0.07
SF3A1-201ENST00000215793 CYLC1P35663 651 aaPredicted RBP15.52■□□□□ 0.07
SF3A1-201ENST00000215793 CHMP4BP1P59074 171 aa15.52■□□□□ 0.07
SF3A1-201ENST00000215793 RTN1Q16799 776 aa15.52■□□□□ 0.07
SF3A1-201ENST00000215793 CCDC174Q6PII3 467 aa15.52■□□□□ 0.07
SF3A1-201ENST00000215793 COPS6Q7L5N1 327 aa15.52■□□□□ 0.07
SF3A1-201ENST00000215793 USP37Q86T82 979 aa15.52■□□□□ 0.07
SF3A1-201ENST00000215793 FSD2A1L4K1 749 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 RAB11FIP4Q86YS3 637 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 SPAG5Q96R06 1193 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 DYNC1I1O14576 645 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 ISM2Q6H9L7 571 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 FERMT2Q96AC1 680 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 SAMM50Q9Y512 469 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 FANCAO15360 1455 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 NBPF6Q5VWK0 638 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 NBPF5PQ86XG9 351 aaPredicted RBP15.51■□□□□ 0.07
SF3A1-201ENST00000215793 NBPF4Q96M43 638 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 CYP7A1P22680 504 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 RFC4P35249 363 aa15.51■□□□□ 0.07
SF3A1-201ENST00000215793 CKAP4Q07065 602 aaKnown RBP15.51■□□□□ 0.07
SF3A1-201ENST00000215793 IFIT1BQ5T764 474 aaKnown RBP15.51■□□□□ 0.07
SF3A1-201ENST00000215793 CCDC97Q96F63 343 aaPredicted RBP15.5■□□□□ 0.07
SF3A1-201ENST00000215793 MYO1BO43795 1136 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 TUBB4AP04350 444 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 AKAP4Q5JQC9 854 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 RRAGBQ5VZM2 374 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 LMBR1LQ6UX01 489 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 BBXQ8WY36 941 aaPredicted RBP15.5■□□□□ 0.07
SF3A1-201ENST00000215793 FERMT1Q9BQL6 677 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 ACTN2P35609 894 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 DHX37Q8IY37 1157 aaKnown RBP15.5■□□□□ 0.07
SF3A1-201ENST00000215793 MRPL50Q8N5N7 158 aaKnown RBP15.5■□□□□ 0.07
SF3A1-201ENST00000215793 LINS1Q8NG48 757 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 DDX12PQ92771 950 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 PSMA7O14818 248 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 TSPY3P0CV98 308 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 TSPY8P0CW00 308 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 LIG1P18858 919 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 TTLL12Q14166 644 aaPredicted RBP15.5■□□□□ 0.07
SF3A1-201ENST00000215793 GIMAP7Q8NHV1 300 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 TTC41PQ6P2S7 1318 aa15.5■□□□□ 0.07
SF3A1-201ENST00000215793 STAT6P42226 847 aa15.49■□□□□ 0.07
SF3A1-201ENST00000215793 ZCRB1Q8TBF4 217 aaKnown RBP15.49■□□□□ 0.07
SF3A1-201ENST00000215793 TMX1Q9H3N1 280 aa15.49■□□□□ 0.07
SF3A1-201ENST00000215793 DMRT2Q9Y5R5 561 aa15.49■□□□□ 0.07
SF3A1-201ENST00000215793 SPECC1LQ69YQ0 1117 aa15.49■□□□□ 0.07
SF3A1-201ENST00000215793 SLC4A4Q9Y6R1 1079 aa15.49■□□□□ 0.07
SF3A1-201ENST00000215793 PPFIA3O75145 1194 aa15.49■□□□□ 0.07
SF3A1-201ENST00000215793 KIAA0753Q2KHM9 967 aa15.49■□□□□ 0.07
SF3A1-201ENST00000215793 RNF187Q5TA31 235 aaPredicted RBP15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms