RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 TAF7LQ5H9L4 462 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 FOXD4L5Q5VV16 416 aaPredicted RBP9.9□□□□□ -0.82
VAMP3-201ENST00000054666 FOXD4L4Q8WXT5 416 aaPredicted RBP9.9□□□□□ -0.82
VAMP3-201ENST00000054666 NEUROD6Q96NK8 337 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 HAUS7Q99871 368 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 GRPEL1Q9HAV7 217 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 ZSWIM6Q9HCJ5 1215 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 SMC3Q9UQE7 1217 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 BCL9O00512 1426 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 JCADQ9P266 1359 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 MAP3K15Q6ZN16 1313 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 RUFY3Q7L099 469 aa9.9□□□□□ -0.83
VAMP3-201ENST00000054666 LMBRD1Q9NUN5 540 aa9.9□□□□□ -0.83
VAMP3-201ENST00000054666 RPAP1Q9BWH6 1393 aaPredicted RBP9.89□□□□□ -0.83
VAMP3-201ENST00000054666 KAT6BQ8WYB5 2073 aa9.89□□□□□ -0.83
VAMP3-201ENST00000054666 SLC27A2O14975 620 aa9.89□□□□□ -0.83
VAMP3-201ENST00000054666 PRPF40AO75400 957 aaKnown RBP9.89□□□□□ -0.83
VAMP3-201ENST00000054666 MBD3O95983 291 aa9.89□□□□□ -0.83
VAMP3-201ENST00000054666 PCCAP05165 728 aaPredicted RBP9.89□□□□□ -0.83
VAMP3-201ENST00000054666 TRIM28Q13263 835 aaKnown RBP9.89□□□□□ -0.83
VAMP3-201ENST00000054666 KRT32Q14532 448 aa9.89□□□□□ -0.83
VAMP3-201ENST00000054666 ANKRD1Q15327 319 aa9.89□□□□□ -0.83
VAMP3-201ENST00000054666 BLOC1S2Q6QNY1 142 aa9.89□□□□□ -0.83
VAMP3-201ENST00000054666 POTEDQ86YR6 584 aa9.89□□□□□ -0.83
VAMP3-201ENST00000054666 SYTL4Q96C24 671 aaPredicted RBP9.89□□□□□ -0.83
VAMP3-201ENST00000054666 EDC3Q96F86 508 aaKnown RBP9.89□□□□□ -0.83
VAMP3-201ENST00000054666 CDCA7Q9BWT1 371 aaPredicted RBP9.89□□□□□ -0.83
VAMP3-201ENST00000054666 FBXO3Q9UK99 471 aa9.89□□□□□ -0.83
VAMP3-201ENST00000054666 PALLDQ8WX93 1383 aa9.89□□□□□ -0.83
VAMP3-201ENST00000054666 XRCC6P12956 609 aaKnown RBP eCLIP9.88□□□□□ -0.83
VAMP3-201ENST00000054666 ADCK5Q3MIX3 580 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 CAVIN1Q6NZI2 390 aaKnown RBP9.88□□□□□ -0.83
VAMP3-201ENST00000054666 DDX46Q7L014 1031 aaKnown RBP9.88□□□□□ -0.83
VAMP3-201ENST00000054666 ATG9AQ7Z3C6 839 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 KBTBD3Q8NAB2 608 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 CCDC9Q9Y3X0 531 aaKnown RBP9.88□□□□□ -0.83
VAMP3-201ENST00000054666 SPEF2Q9C093 1822 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 DOT1LQ8TEK3 1739 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 CPA1P15085 419 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 GIGYF2Q6Y7W6 1299 aaKnown RBP9.88□□□□□ -0.83
VAMP3-201ENST00000054666 ZNF589Q86UQ0 364 aaPredicted RBP9.88□□□□□ -0.83
VAMP3-201ENST00000054666 TICAM2Q86XR7 235 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 ZBTB38Q8NAP3 1195 aaPredicted RBP9.88□□□□□ -0.83
VAMP3-201ENST00000054666 PLA2G12BQ9BX93 195 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 PAG1Q9NWQ8 432 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 CEP126Q9P2H0 1117 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 AKAP2Q9Y2D5 859 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 ANKRD36CQ5JPF3 1778 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 SH3TC1Q8TE82 1336 aa9.88□□□□□ -0.83
VAMP3-201ENST00000054666 LRRFIP1Q32MZ4 808 aaKnown RBP9.87□□□□□ -0.83
VAMP3-201ENST00000054666 MCMDC2Q4G0Z9 681 aa9.87□□□□□ -0.83
VAMP3-201ENST00000054666 LRRC24Q50LG9 513 aa9.87□□□□□ -0.83
VAMP3-201ENST00000054666 CCDC83Q8IWF9 413 aa9.87□□□□□ -0.83
VAMP3-201ENST00000054666 ZNF594Q96JF6 807 aaPredicted RBP9.87□□□□□ -0.83
VAMP3-201ENST00000054666 ATP6V1DQ9Y5K8 247 aa9.87□□□□□ -0.83
VAMP3-201ENST00000054666 U3KPZ7 1027 aaPredicted RBP9.87□□□□□ -0.83
VAMP3-201ENST00000054666 CDHR2Q9BYE9 1310 aa9.87□□□□□ -0.83
VAMP3-201ENST00000054666 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.87□□□□□ -0.83
VAMP3-201ENST00000054666 A0A1B0GUL7 405 aa9.87□□□□□ -0.83
VAMP3-201ENST00000054666 GOLIM4O00461 696 aa9.87□□□□□ -0.83
VAMP3-201ENST00000054666 TAF5LO75529 589 aa9.87□□□□□ -0.83
VAMP3-201ENST00000054666 IFIT1P09914 478 aaKnown RBP9.87□□□□□ -0.83
VAMP3-201ENST00000054666 IFIT5Q13325 482 aaKnown RBP9.87□□□□□ -0.83
VAMP3-201ENST00000054666 GORABQ5T7V8 394 aa9.87□□□□□ -0.83
VAMP3-201ENST00000054666 NDUFB9Q9Y6M9 179 aa9.87□□□□□ -0.83
VAMP3-201ENST00000054666 PHLPP1O60346 1717 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 A0A0G2JS52 829 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 STX6O43752 255 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 CCDC158Q5M9N0 1113 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 FAM89AQ96GI7 184 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 THRAP3Q9Y2W1 955 aaKnown RBP9.86□□□□□ -0.83
VAMP3-201ENST00000054666 ZSCAN22P10073 491 aaPredicted RBP9.86□□□□□ -0.83
VAMP3-201ENST00000054666 CYP19A1P11511 503 aaPredicted RBP9.86□□□□□ -0.83
VAMP3-201ENST00000054666 RPS6KB1P23443 525 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 TIMM10P62072 90 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 TSGA10IPQ3SY00 556 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 TTC39AQ5SRH9 613 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 USPL1Q5W0Q7 1092 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.86□□□□□ -0.83
VAMP3-201ENST00000054666 ANP32BQ92688 251 aaKnown RBP9.86□□□□□ -0.83
VAMP3-201ENST00000054666 SYAP1Q96A49 352 aaPredicted RBP9.86□□□□□ -0.83
VAMP3-201ENST00000054666 LARP6Q9BRS8 491 aaKnown RBP9.86□□□□□ -0.83
VAMP3-201ENST00000054666 HELLSQ9NRZ9 838 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 ZBTB1Q9Y2K1 713 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 NRAPQ86VF7 1730 aa9.86□□□□□ -0.83
VAMP3-201ENST00000054666 LARGE1O95461 756 aa9.85□□□□□ -0.83
VAMP3-201ENST00000054666 PDIA4P13667 645 aaKnown RBP9.85□□□□□ -0.83
VAMP3-201ENST00000054666 GPTP24298 496 aa9.85□□□□□ -0.83
VAMP3-201ENST00000054666 GJB2P29033 226 aa9.85□□□□□ -0.83
VAMP3-201ENST00000054666 ZNF445P59923 1031 aa9.85□□□□□ -0.83
VAMP3-201ENST00000054666 DDB1Q16531 1140 aa9.85□□□□□ -0.83
VAMP3-201ENST00000054666 ZSCAN23Q3MJ62 389 aa9.85□□□□□ -0.83
VAMP3-201ENST00000054666 NLRP10Q86W26 655 aa9.85□□□□□ -0.83
VAMP3-201ENST00000054666 PANK2Q9BZ23 570 aa9.85□□□□□ -0.83
VAMP3-201ENST00000054666 MYH3P11055 1940 aa9.85□□□□□ -0.83
VAMP3-201ENST00000054666 ADAMTS2O95450 1211 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 SYT1P21579 422 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 IL6STP40189 918 aaPredicted RBP9.84□□□□□ -0.83
VAMP3-201ENST00000054666 CSPP1Q1MSJ5 1256 aa9.84□□□□□ -0.83
VAMP3-201ENST00000054666 CCDC129Q6ZRS4 1044 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms