RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PLEKP08567 350 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 H2BFMP0C1H6 154 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 LINC00869P0C866 280 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 GSTT2P0CG29 244 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 GSTT2BP0CG30 244 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PPIAL4GP0DN37 164 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 RRASP10301 218 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ETS1P14921 441 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 UQCRBP14927 111 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ZNF30P17039 623 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 LGALS3P17931 250 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 UQCRC2P22695 453 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 OMGP23515 440 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PAX7P23759 505 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 COX7A1P24310 79 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 MMP11P24347 488 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 DNAJB1P25685 340 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 FGF9P31371 208 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 SHMT2P34897 504 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 BTCP35070 178 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CA8P35219 290 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 COPB2P35606 906 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 LONP1P36776 959 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 MAGEA5P43359 124 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 KIR2DS4P43632 304 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 VDAC2P45880 294 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 ASMTP46597 345 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 RABIFP47224 123 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 P2RY1P47900 373 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 NMUP48645 174 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 NCBP2P52298 156 aaKnown RBP eCLIP0.16□□□□□ -2.38
VPS35-212ENST00000640313 PLK1P53350 603 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 HSD17B7P56937 341 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SLC26A5P58743 744 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 RAP1BP61224 184 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ACTA1P68133 377 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SPIBQ01892 262 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 MEF2BQ02080 365 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 TGFBR3Q03167 851 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 HSF2Q03933 536 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CSTF1Q05048 431 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 LOXL1Q08397 574 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 SYCNQ0VAF6 134 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 AP1B1Q10567 949 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 WASHC5Q12768 1159 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CBX3Q13185 183 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SRSF5Q13243 272 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 RIPK1Q13546 671 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 VGLL4Q14135 290 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 GGTLC2Q14390 218 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PDK1Q15118 436 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CYTH1Q15438 398 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TRIP10Q15642 601 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CEBPEQ15744 281 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 STK11Q15831 433 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ATP6AP1Q15904 470 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SGCAQ16586 387 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 GUCA2BQ16661 112 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TMEM183BQ1AE95 376 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 RFX4Q33E94 735 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SLC25A52Q3SY17 297 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 GGTA1PQ4G0N0 100 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PARP10Q53GL7 1025 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 LRRC10Q5BKY1 277 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TOR1AIP1Q5JTV8 583 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 RABGAP1LQ5R372 815 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 VAX1Q5SQQ9 334 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 DNLZQ5SXM8 178 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 C1orf220Q5T0J3 134 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 MARCH8Q5T0T0 291 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PRR9Q5T870 116 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 C12orf60Q5U649 245 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PYHIN1Q6K0P9 492 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ZNF880Q6PDB4 577 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CES3Q6UWW8 571 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TMIGD1Q6UXZ0 262 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 NTM-AS1Q6ZSK4 140 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CATSPER4Q7RTX7 472 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 APTXQ7Z2E3 356 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 DPY19L4Q7Z388 723 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 C6orf120Q7Z4R8 191 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CAMK2N1Q7Z7J9 78 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 WDR86Q86TI4 376 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TPRA1Q86W33 373 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 IQCA1Q86XH1 822 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PCP2Q8IVA1 136 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 NRMQ8IXM6 262 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TMEM183AQ8IXX5 376 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PIANPQ8IYJ0 282 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ZNF679Q8IYX0 411 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 OSR2Q8N2R0 312 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 STPG2Q8N412 459 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 HDDC3Q8N4P3 179 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 DHRSXQ8N5I4 330 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CLDN19Q8N6F1 224 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TMCO5AQ8N6Q1 288 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 KIR3DL3Q8N743 410 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 Q8N976 141 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 LINC00304Q8N9R0 145 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 DENND6BQ8NEG7 585 aa0.16□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms