RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TRMT10BQ6PF06 316 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 PAPD4Q6PIY7 484 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 ADGRG3Q86Y34 549 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 FNDC9Q8TBE3 224 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 MRGPRX2Q96LB1 330 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 SLC12A9Q9BXP2 914 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 AMBNQ9NP70 447 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 CD93Q9NPY3 652 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 OAZ3Q9UMX2 235 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 KCTD3Q9Y597 815 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 C4AP0C0L4 1744 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 DOCK1Q14185 1865 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 CHD5Q8TDI0 1954 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 TRAV6A0A075B6T7 132 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 CD8B2A6NJW9 211 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 FAM159BA6NKW6 160 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 PPIHO43447 177 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 C1orf105O95561 183 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 CDKN2CP42773 168 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 SLC6A11P48066 632 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 PPP1CAP62136 330 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 ATXN7L3Q14CW9 347 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 TRIP6Q15654 476 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 SSX2Q16385 188 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 HFEQ30201 348 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 CFAP77Q6ZQR2 320 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 CATSPERDQ86XM0 798 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 C12orf43Q96C57 262 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 TCEAL4Q96EI5 215 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 C7orf34Q96L11 122 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 TRNAU1APQ9NX07 287 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 TRAV17A0A0B4J275 112 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 FAM90A27PA6NNH2 459 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 H0YGG7 62 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 GPR75O95800 540 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 AMY2AP04746 511 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 GGT1P19440 569 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 MAOAP21397 527 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 EDDM3AQ14507 147 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 IHHQ14623 411 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 RPE65Q16518 533 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 NKAIN1Q4KMZ8 207 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 LAIR1Q6GTX8 287 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 HEPHL1Q6MZM0 1159 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 PLBD1Q6P4A8 553 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF836Q6ZNA1 936 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 PGAP1Q75T13 922 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 TSPAN33Q86UF1 283 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 CBARPQ8N350 705 aaPredicted RBP5.71□□□□□ -1.49
SCN1A-217ENST00000637988 KRTCAP2Q8N6L1 136 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 C3orf58Q8NDZ4 430 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 SLC25A43Q8WUT9 341 aaPredicted RBP5.71□□□□□ -1.49
SCN1A-217ENST00000637988 RDH12Q96NR8 316 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 PRRT1Q99946 306 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 ALG8Q9BVK2 526 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 IL25Q9H293 177 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 TEX10Q9NXF1 929 aaPredicted RBP5.71□□□□□ -1.49
SCN1A-217ENST00000637988 POLDIP2Q9Y2S7 368 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 KNL1Q8NG31 2342 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 RGPD3A6NKT7 1758 aaPredicted RBP5.71□□□□□ -1.49
SCN1A-217ENST00000637988 DNASE2O00115 360 aaPredicted RBP5.71□□□□□ -1.49
SCN1A-217ENST00000637988 OPN1LWP04000 364 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 ELK4P28324 431 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 HOXD12P35452 270 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 MTNR1AP48039 350 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 GRB2P62993 217 aaKnown RBP5.71□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF91Q05481 1191 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 LIPKQ5VXJ0 399 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 CD300LGQ6UXG3 332 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 RPS19BP1Q86WX3 136 aaKnown RBP5.71□□□□□ -1.49
SCN1A-217ENST00000637988 PLD6Q8N2A8 252 aaKnown RBP5.71□□□□□ -1.49
SCN1A-217ENST00000637988 ABHD4Q8TB40 342 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 DOK4Q8TEW6 326 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 CXorf21Q9HAI6 301 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 OLAHQ9NV23 265 aa5.71□□□□□ -1.49
SCN1A-217ENST00000637988 NPIPB15A6NHN6 443 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 SULT1B1O43704 296 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 CD8BP10966 210 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 PTGS2P35354 604 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 GDF10P55107 478 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ERVFC1P60507 584 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 SYT6Q5T7P8 510 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 RNLSQ5VYX0 342 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 NDUFAF7Q7L592 441 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ETFBKMTQ8IXQ9 262 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 DEFB124Q8NES8 71 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 OR10AD1Q8NGE0 317 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF431Q8TF32 576 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 FRZBQ92765 325 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 CIDECQ96AQ7 238 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 SLC46A2Q9BY10 475 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 LSM5Q9Y4Y9 91 aaKnown RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 DNAJC13O75165 2243 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 KDM4EB2RXH2 506 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 SH2D1BO14796 132 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 GMDSO60547 372 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 CT45A10P0DMU9 189 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 TNFRSF1AP19438 455 aa5.71□□□□□ -1.5
SCN1A-217ENST00000637988 C21orf33P30042 268 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-217ENST00000637988 GPR3P46089 330 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms