RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 FREM2Q5SZK8 3169 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 A6NL46 340 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 EFSO43281 561 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 XPNPEP2O43895 674 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 EFNA2O43921 213 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 PRKYO43930 277 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 CBR3O75828 277 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 ADH6P28332 368 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 EIF1P41567 113 aaKnown RBP16.66■□□□□ 0.26
CLN3-254ENST00000637050 RPS5P46782 204 aaKnown RBP16.66■□□□□ 0.26
CLN3-254ENST00000637050 DSCR4P56555 118 aaPredicted RBP16.66■□□□□ 0.26
CLN3-254ENST00000637050 GABARAPL2P60520 117 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 TMEM201Q5SNT2 666 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 SLC25A30Q5SVS4 291 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 C1orf140Q5VVS0 124 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 LNX2Q8N448 690 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 FAM26EQ8N5C1 309 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 C10orf53Q8N6V4 93 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 TCEANCQ8N8B7 351 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 ZBTB8AQ96BR9 441 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 SLC38A2Q96QD8 506 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 IL4I1Q96RQ9 567 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 TEX12Q9BXU0 123 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 MRPS26Q9BYN8 205 aaKnown RBP16.66■□□□□ 0.26
CLN3-254ENST00000637050 PLCXD1Q9NUJ7 323 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 ZNF229Q9UJW7 825 aa16.66■□□□□ 0.26
CLN3-254ENST00000637050 TRIM64CA6NLI5 447 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 SHISA8B8ZZ34 492 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 TLX3O43711 291 aaPredicted RBP16.65■□□□□ 0.26
CLN3-254ENST00000637050 NDUFB2O95178 105 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 MT-ATP6P00846 226 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 HMGN1P05114 100 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 TSPAN19P0C672 248 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 DPP4P27487 766 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 SLC6A6P31641 620 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 GRK5P34947 590 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 CDH15P55291 814 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 MFAP5Q13361 173 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 OR1C1Q15619 314 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 SNAPC1Q16533 368 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 ANKDD1AQ495B1 522 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 FAM69AQ5T7M9 428 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 ZNF248Q8NDW4 579 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 OR6S1Q8NH40 331 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 JSRP1Q96MG2 331 aaPredicted RBP16.65■□□□□ 0.26
CLN3-254ENST00000637050 OR11A1Q9GZK7 315 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 RNF32Q9H0A6 362 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 ZNF552Q9H707 407 aaPredicted RBP16.65■□□□□ 0.26
CLN3-254ENST00000637050 PLA2G3Q9NZ20 509 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 BAIAP2Q9UQB8 552 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 HIF3AQ9Y2N7 669 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 MSRB2Q9Y3D2 182 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 MED13Q9UHV7 2174 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 SH3D21A4FU49 640 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 SURF4O15260 269 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 PRPS1P60891 318 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 OCLNQ16625 522 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 TMEM44Q2T9K0 475 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 GTPBP8Q8N3Z3 284 aaPredicted RBP16.65■□□□□ 0.26
CLN3-254ENST00000637050 TMEM163Q8TC26 289 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 IFT27Q9BW83 186 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 SERINC1Q9NRX5 453 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 CLN6Q9NWW5 311 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 TUBA8Q9NY65 449 aaPredicted RBP16.65■□□□□ 0.26
CLN3-254ENST00000637050 SCN3BQ9NY72 215 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 TPRKBQ9Y3C4 175 aa16.65■□□□□ 0.26
CLN3-254ENST00000637050 A0A087WXM4 84 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 LRRC3CA6NJW4 275 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 KLK10O43240 276 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 TLX2O43763 284 aaPredicted RBP16.64■□□□□ 0.25
CLN3-254ENST00000637050 OR2T1O43869 369 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 ZIC3O60481 467 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 AHSA1O95433 338 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 IL11P20809 199 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 UQCRC1P31930 480 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 TUBA4AP68366 448 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 FOXK1P85037 733 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 MDS2Q8NDY4 140 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 SNIP1Q8TAD8 396 aaKnown RBP16.64■□□□□ 0.25
CLN3-254ENST00000637050 DDIT4LQ96D03 193 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 Q96MT0 163 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 GPX7Q96SL4 187 aaPredicted RBP16.64■□□□□ 0.25
CLN3-254ENST00000637050 POTEKPQ9BYX7 375 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 DUSP21Q9H596 190 aa16.64■□□□□ 0.25
CLN3-254ENST00000637050 PAK1IP1Q9NWT1 392 aaPredicted RBP16.64■□□□□ 0.25
CLN3-254ENST00000637050 OR5H15A6NDH6 313 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 FTCDNL1E5RQL4 147 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 FAM20BO75063 409 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 CLPTM1O96005 669 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 ATP6V1B1P15313 513 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 HK1P19367 917 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 GPR85P60893 370 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 SLC35A2P78381 396 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 FOXO1Q12778 655 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 GXYLT1Q4G148 440 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 C3orf33Q6P1S2 294 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 MAMDC2Q7Z304 686 aaPredicted RBP16.63■□□□□ 0.25
CLN3-254ENST00000637050 SGCDQ92629 289 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 HAS2Q92819 552 aa16.63■□□□□ 0.25
CLN3-254ENST00000637050 ARL5BQ96KC2 179 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms