RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 EFNB1P98172 346 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 CDC20Q12834 499 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 PGGHGQ32M88 737 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 KCTD21Q4G0X4 260 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 CLDN22Q8N7P3 220 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 IFT27Q9BW83 186 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 ZNF552Q9H707 407 aaPredicted RBP18.18■□□□□ 0.5
CLN3-250ENST00000636839 NANSQ9NR45 359 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 KLHL1Q9NR64 748 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 CHRNA9Q9UGM1 479 aa18.18■□□□□ 0.5
CLN3-250ENST00000636839 TRIM64A6NGJ6 449 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 A8MVM7 634 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 MCIDASD6RGH6 385 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 H3BML4 177 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 ETV2O00321 342 aaPredicted RBP18.17■□□□□ 0.5
CLN3-250ENST00000636839 ZIC3O60481 467 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 HCN1O60741 890 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 ENTPD6O75354 484 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 BGLAPP02818 100 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 HTR1AP08908 422 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 EEF1B2P24534 225 aaKnown RBP18.17■□□□□ 0.5
CLN3-250ENST00000636839 RFC3P40938 356 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 AQP2P41181 271 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 AGAP7PQ5VUJ5 663 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 C1orf140Q5VVS0 124 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 OR2T33Q8NG76 320 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 KCNE4Q8WWG9 221 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 AGAP4Q96P64 663 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 PTGES2Q9H7Z7 377 aa18.17■□□□□ 0.5
CLN3-250ENST00000636839 TUBA8Q9NY65 449 aaPredicted RBP18.17■□□□□ 0.5
CLN3-250ENST00000636839 LRRC3CA6NJW4 275 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 RCBTB2O95199 551 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 SNX4O95219 450 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 PPP1R3DO95685 299 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 ASAH2BP0C7U1 165 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 BMP7P18075 431 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 DPP4P27487 766 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 SHC1P29353 583 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 APOBEC1P41238 236 aaKnown RBP18.16■□□□□ 0.5
CLN3-250ENST00000636839 HTR3AP46098 478 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 RRADP55042 308 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 DLX5P56178 289 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 APOFQ13790 326 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 RBM48Q5RL73 367 aaKnown RBP18.16■□□□□ 0.5
CLN3-250ENST00000636839 FDCSPQ8NFU4 85 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 ZNF337Q9Y3M9 751 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 ADAM18Q9Y3Q7 739 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 TRAV36DV7A0A075B6V5 113 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 SDHBP21912 280 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 SLC25A53Q5H9E4 307 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 TMEM41AQ96HV5 264 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 MRGPRX4Q96LA9 322 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 ERVK-18Q9QC07 812 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 CSAG2Q9Y5P2 127 aa18.16■□□□□ 0.5
CLN3-250ENST00000636839 ZNF891A8MT65 544 aaPredicted RBP18.15■□□□□ 0.5
CLN3-250ENST00000636839 SURF4O15260 269 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 FAM20BO75063 409 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 SNRPGP62308 76 aaKnown RBP18.15■□□□□ 0.5
CLN3-250ENST00000636839 RPS4XP62701 263 aaKnown RBP18.15■□□□□ 0.5
CLN3-250ENST00000636839 MVKQ03426 396 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 TOMM20Q15388 145 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 SLC6A19Q695T7 634 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 GPALPP1Q8IXQ4 340 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 OR52L1Q8NGH7 329 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 POLDIP3Q9BY77 421 aaKnown RBP18.15■□□□□ 0.5
CLN3-250ENST00000636839 YTHDF1Q9BYJ9 559 aaKnown RBP18.15■□□□□ 0.5
CLN3-250ENST00000636839 POLHQ9Y253 713 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 MGAQ8IWI9 3026 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 FAM183AA6NL82 134 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 HK1P19367 917 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 CASRP41180 1078 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 SOX8P57073 446 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 FOXO1Q12778 655 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 OR8J1Q8NGP2 316 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 LRR1Q96L50 414 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 TIMMDC1Q9NPL8 285 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 ABI3Q9P2A4 366 aa18.15■□□□□ 0.5
CLN3-250ENST00000636839 NCKAP5O14513 1909 aa18.14■□□□□ 0.5
CLN3-250ENST00000636839 APC2O95996 2303 aa18.14■□□□□ 0.5
CLN3-250ENST00000636839 F13BP05160 661 aa18.14■□□□□ 0.49
CLN3-250ENST00000636839 TFAP2AP05549 437 aa18.14■□□□□ 0.49
CLN3-250ENST00000636839 TFPIP10646 304 aa18.14■□□□□ 0.49
CLN3-250ENST00000636839 CNR1P21554 472 aa18.14■□□□□ 0.49
CLN3-250ENST00000636839 FOXK2Q01167 660 aa18.14■□□□□ 0.49
CLN3-250ENST00000636839 ZNF362Q5T0B9 420 aaPredicted RBP18.14■□□□□ 0.49
CLN3-250ENST00000636839 SULF2Q8IWU5 870 aa18.14■□□□□ 0.49
CLN3-250ENST00000636839 LNX2Q8N448 690 aa18.14■□□□□ 0.49
CLN3-250ENST00000636839 BBS1Q8NFJ9 593 aa18.14■□□□□ 0.49
CLN3-250ENST00000636839 LIPHQ8WWY8 451 aa18.14■□□□□ 0.49
CLN3-250ENST00000636839 ZNF566Q969W8 418 aa18.14■□□□□ 0.49
CLN3-250ENST00000636839 MED20Q9H944 212 aa18.14■□□□□ 0.49
CLN3-250ENST00000636839 DPPA5A6NC42 116 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 CBR3O75828 277 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 NDUFB2O95178 105 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 CLPTM1O96005 669 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 IGF2P01344 180 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 ADRA2AP08913 450 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 FREM3P0C091 2139 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 CCDC159P0C7I6 412 aa18.13■□□□□ 0.49
CLN3-250ENST00000636839 IMPDH2P12268 514 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms