RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SLC25A28Q96A46 364 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 ZNF48Q96MX3 618 aaPredicted RBP12.46□□□□□ -0.41
CLN3-249ENST00000636685 ZNF385AQ96PM9 386 aaKnown RBP12.46□□□□□ -0.41
CLN3-249ENST00000636685 STACQ99469 402 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 LAT2Q9GZY6 243 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 DPH5Q9H2P9 285 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 ZNF69Q9UC07 566 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 CHRNA9Q9UGM1 479 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 HDGFL3Q9Y3E1 203 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 CMAHPQ9Y471 501 aa12.46□□□□□ -0.41
CLN3-249ENST00000636685 SPIN1Q9Y657 262 aaPredicted RBP12.46□□□□□ -0.41
CLN3-249ENST00000636685 M0QZ24 198 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 KRT33AO76009 404 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 SUPT7LO94864 414 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 IGKV3-15P01624 115 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 CCNA2P20248 432 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 PAX7P23759 505 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 GUCY2DQ02846 1103 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 MVKQ03426 396 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 MAD2L1BPQ15013 274 aaPredicted RBP12.45□□□□□ -0.42
CLN3-249ENST00000636685 NOXRED1Q6NXP6 359 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 RHOUQ7L0Q8 258 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 RELL1Q8IUW5 271 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 WFDC12Q8WWY7 111 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 TMEM45BQ96B21 275 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 TMIGD2Q96BF3 282 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 FAM120BQ96EK7 910 aaKnown RBP12.45□□□□□ -0.42
CLN3-249ENST00000636685 CCDC106Q9BWC9 280 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 ZNF416Q9BWM5 594 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 IQCGQ9H095 443 aaKnown RBP12.45□□□□□ -0.42
CLN3-249ENST00000636685 NELFAQ9H3P2 528 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 OXSMQ9NWU1 459 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 TMEM181Q9P2C4 612 aa12.45□□□□□ -0.42
CLN3-249ENST00000636685 ZNF587BE7ETH6 402 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 AKAP10O43572 662 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 GSNP06396 782 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 PCGF2P35227 344 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 RBMXP38159 391 aaKnown RBP12.44□□□□□ -0.42
CLN3-249ENST00000636685 APOBEC1P41238 236 aaKnown RBP12.44□□□□□ -0.42
CLN3-249ENST00000636685 C17orf107Q6ZR85 190 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 LINGO2Q7L985 606 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 ABHD12BQ7Z5M8 362 aaPredicted RBP12.44□□□□□ -0.42
CLN3-249ENST00000636685 KIR3DL3Q8N743 410 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 FAM169BQ8N8A8 192 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 UBE2FQ969M7 185 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 RAB39BQ96DA2 213 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 ALKBH3Q96Q83 286 aaPredicted RBP12.44□□□□□ -0.42
CLN3-249ENST00000636685 MRPL57Q9BQC6 102 aaKnown RBP12.44□□□□□ -0.42
CLN3-249ENST00000636685 SYT3Q9BQG1 590 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 MRPL46Q9H2W6 279 aaKnown RBP12.44□□□□□ -0.42
CLN3-249ENST00000636685 MS4A5Q9H3V2 200 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 NOX3Q9HBY0 568 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 ZCCHC3Q9NUD5 404 aaKnown RBP12.44□□□□□ -0.42
CLN3-249ENST00000636685 MMP24Q9Y5R2 645 aa12.44□□□□□ -0.42
CLN3-249ENST00000636685 CENPVL1A0A0U1RR11 272 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 SERTM1A2A2V5 107 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 KNG1P01042 644 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 IGHV2-5P01817 119 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 UBTFL6P0CB48 400 aaPredicted RBP12.43□□□□□ -0.42
CLN3-249ENST00000636685 IMPDH2P12268 514 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 CBR1P16152 277 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 FRKP42685 505 aaPredicted RBP12.43□□□□□ -0.42
CLN3-249ENST00000636685 MAGEA4P43358 317 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 EVX1P49640 407 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 SLC35A1P78382 337 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 NPRL3Q12980 569 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 CALCOCO2Q13137 446 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 SLC9A3R2Q15599 337 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 IMPG1Q17R60 797 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 ZNF678Q5SXM1 525 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 TEX35Q5T0J7 233 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 REP15Q6BDI9 236 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 LRP11Q86VZ4 500 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 ADGRG3Q86Y34 549 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 TMEM151AQ8N4L1 468 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 OR9K2Q8NGE7 335 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 FAM76AQ8TAV0 307 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 MAGEE2Q8TD90 523 aaPredicted RBP12.43□□□□□ -0.42
CLN3-249ENST00000636685 PPCDCQ96CD2 204 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 TMEM237Q96Q45 408 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 GPA33Q99795 319 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 CITED1Q99966 193 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 RBM4BQ9BQ04 359 aaKnown RBP12.43□□□□□ -0.42
CLN3-249ENST00000636685 NAA11Q9BSU3 229 aaPredicted RBP12.43□□□□□ -0.42
CLN3-249ENST00000636685 CRLF2Q9HC73 371 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLN3-249ENST00000636685 SIRT3Q9NTG7 399 aaPredicted RBP12.43□□□□□ -0.42
CLN3-249ENST00000636685 SH3BP4Q9P0V3 963 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 MYEF2Q9P2K5 600 aaKnown RBP12.43□□□□□ -0.42
CLN3-249ENST00000636685 KCNE5Q9UJ90 142 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 MID2Q9UJV3 735 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 TRAPPC4Q9Y296 219 aa12.43□□□□□ -0.42
CLN3-249ENST00000636685 ZNF503-AS2A6NEH8 195 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 ZSCAN12O43309 604 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 CDC14BO60729 498 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 EIF1BO60739 113 aaKnown RBP12.42□□□□□ -0.42
CLN3-249ENST00000636685 ENO1P06733 434 aaKnown RBP12.42□□□□□ -0.42
CLN3-249ENST00000636685 NAT2P11245 290 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 GATA3P23771 443 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 MAGEA12P43365 314 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms