RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 PRIMA1Q86XR5 153 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 OR52N5Q8NH56 324 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 SPATA3Q8NHX4 192 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 CNOT9Q92600 299 aaKnown RBP10.49□□□□□ -0.73
UPF3B-204ENST00000619445 NEUROG1Q92886 237 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 TMEM45BQ96B21 275 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 ZG16BQ96DA0 208 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 ZNF317Q96PQ6 595 aaPredicted RBP10.49□□□□□ -0.73
UPF3B-204ENST00000619445 PAIP2Q9BPZ3 127 aaKnown RBP10.49□□□□□ -0.73
UPF3B-204ENST00000619445 INPP5KQ9BT40 448 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 OR11A1Q9GZK7 315 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 C20orf27Q9GZN8 174 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 RMND5AQ9H871 391 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 NPAP1Q9NZP6 1156 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 OSGIN1Q9UJX0 560 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 ZNF232Q9UNY5 417 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 FLVCR1Q9Y5Y0 555 aa10.49□□□□□ -0.73
UPF3B-204ENST00000619445 H7C417 338 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 PDLIM1O00151 329 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 SDHDO14521 159 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 IGHV3-9P01782 118 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 CHRM4P08173 479 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 ZCCHC18P0CG32 403 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 TACR3P29371 465 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 MPGP29372 298 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 SLC18A1P54219 525 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 PRPS1P60891 318 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 UFM1P61960 85 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 EPS8Q12929 822 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 LARS2Q15031 903 aaKnown RBP10.48□□□□□ -0.73
UPF3B-204ENST00000619445 SYPL1Q16563 259 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 MRPL2Q5T653 305 aaKnown RBP10.48□□□□□ -0.73
UPF3B-204ENST00000619445 WBP2NLQ6ICG8 309 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 OLIG3Q7RTU3 272 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 CCDC103Q8IW40 242 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 MUC15Q8N387 334 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 ANKFN1Q8N957 763 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 SLC35B4Q969S0 331 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 BOD1Q96IK1 185 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 TAPBPLQ9BX59 468 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 PARD6BQ9BYG5 372 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 ADAM19Q9H013 955 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 RAD21L1Q9H4I0 556 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 FBXO9Q9UK97 447 aaPredicted RBP10.48□□□□□ -0.73
UPF3B-204ENST00000619445 GPR45Q9Y5Y3 372 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 PMF1-BGLAPU3KQ54 211 aa10.48□□□□□ -0.73
UPF3B-204ENST00000619445 PRAMEF27A3QJZ7 478 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 CDHR4A6H8M9 788 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 A8MVM7 634 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 M0R1B8 84 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 ADAM11O75078 769 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 BCAS1O75363 584 aaPredicted RBP10.47□□□□□ -0.73
UPF3B-204ENST00000619445 SLC22A3O75751 556 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 ANP32DO95626 131 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 ALDOCP09972 364 aaKnown RBP10.47□□□□□ -0.73
UPF3B-204ENST00000619445 SLC25A16P16260 332 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 CCNA2P20248 432 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 EDNRAP25101 427 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 FABP6P51161 128 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 ZNF83P51522 516 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 KRTAP1-1Q07627 177 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 PDCD4Q53EL6 469 aaKnown RBP10.47□□□□□ -0.73
UPF3B-204ENST00000619445 OTUD3Q5T2D3 398 aaPredicted RBP10.47□□□□□ -0.73
UPF3B-204ENST00000619445 RNF220Q5VTB9 566 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 PRAMEF8Q5VWM4 474 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 PRAMEF7Q5VXH5 474 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 PODNL1Q6PEZ8 512 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.47□□□□□ -0.73
UPF3B-204ENST00000619445 ATG4DQ86TL0 474 aaPredicted RBP10.47□□□□□ -0.73
UPF3B-204ENST00000619445 ITCHQ96J02 903 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 CACNG6Q9BXT2 260 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 SLC17A5Q9NRA2 495 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 PNPOQ9NVS9 261 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 ZIM2Q9NZV7 527 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 RAB21Q9UL25 225 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 B3GALT5Q9Y2C3 310 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 IFT52Q9Y366 437 aa10.47□□□□□ -0.73
UPF3B-204ENST00000619445 A0A0G2JPF8 293 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 TMEM72A0PK05 275 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 LIPT2A6NK58 231 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 AQP7P3A6NL99 342 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 ELOA3DA6NLF2 546 aaPredicted RBP10.46□□□□□ -0.74
UPF3B-204ENST00000619445 CLDN24A6NM45 220 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 KIAA1324LA8MWY0 1029 aaPredicted RBP10.46□□□□□ -0.74
UPF3B-204ENST00000619445 HNRNPCL2B2RXH8 293 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 HNRNPCL3B7ZW38 293 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 E7EQL1 145 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 AP3D1O14617 1153 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 SSX4O60224 188 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 HNRNPCL1O60812 293 aaKnown RBP10.46□□□□□ -0.74
UPF3B-204ENST00000619445 SNNO75324 88 aaPredicted RBP10.46□□□□□ -0.74
UPF3B-204ENST00000619445 KRT33AO76009 404 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 ITGA5P08648 1049 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 HNRNPCL4P0DMR1 293 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 IMPDH2P12268 514 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 EPHA3P29320 983 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 APOBEC3AP31941 199 aaPredicted RBP10.46□□□□□ -0.74
UPF3B-204ENST00000619445 PLAURQ03405 335 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 ELOA3BQ3SY89 546 aa10.46□□□□□ -0.74
UPF3B-204ENST00000619445 TMEM225Q6GV28 225 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms