RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 ASCL3Q9NQ33 180 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 UBQLN4Q9NRR5 601 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 TXNL4BQ9NX01 149 aaKnown RBP10.7□□□□□ -0.7
VRK3-223ENST00000601341 EXOGQ9Y2C4 368 aaKnown RBP10.7□□□□□ -0.7
VRK3-223ENST00000601341 CMAHPQ9Y471 501 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 NPIPA5A0A0B4J1W7 369 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 LOC101059948A0A1B0GTJ6 334 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 NPIPA7E9PJI5 369 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 NPIPB9F8W1W9 429 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 CTDSP2O14595 271 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 REM1O75628 298 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 IGHA1P01876 353 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 TSPAN19P0C672 248 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 NPIPA8P0DM63 369 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 F8A1P23610 371 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 ABCD3P28288 659 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 IL12BP29460 328 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 CAPZA2P47755 286 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 ETV1P50549 477 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 DOC2BQ14184 412 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 PDZK1Q5T2W1 519 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 AADACL4Q5VUY2 407 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 NXNL2Q5VZ03 156 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 ZNF836Q6ZNA1 936 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 ZNF620Q6ZNG0 422 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 PRICKLE2Q7Z3G6 844 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 AKAP14Q86UN6 197 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 RANBP3LQ86VV4 465 aaPredicted RBP10.7□□□□□ -0.7
VRK3-223ENST00000601341 CLIP4Q8N3C7 705 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 GDPD1Q8N9F7 314 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 ZNF527Q8NB42 609 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 PSD4Q8NDX1 1056 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 RNFT2Q96EX2 444 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 ADOQ96SZ5 270 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 MOV10Q9HCE1 1003 aaKnown RBP10.7□□□□□ -0.7
VRK3-223ENST00000601341 MMP25Q9NPA2 562 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 SF3B6Q9Y3B4 125 aaKnown RBP10.7□□□□□ -0.7
VRK3-223ENST00000601341 CHST2Q9Y4C5 530 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 CDH10Q9Y6N8 788 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 V9GYH0 126 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 SDK2Q58EX2 2172 aa10.7□□□□□ -0.7
VRK3-223ENST00000601341 CENPVL1A0A0U1RR11 272 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 TRDV1A0A1B0GX56 115 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 DCDC2BA2VCK2 349 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 SURF4O15260 269 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 AKAP8O43823 692 aaKnown RBP10.69□□□□□ -0.7
VRK3-223ENST00000601341 ATP6V1G1O75348 118 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 HPGDP15428 266 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 HTR1FP30939 366 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 PNLIPRP2P54317 469 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 RTP5Q14D33 572 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 MRPL2Q5T653 305 aaKnown RBP10.69□□□□□ -0.7
VRK3-223ENST00000601341 DDI2Q5TDH0 399 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 LIPKQ5VXJ0 399 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 XKRXQ6PP77 449 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 METAP1DQ6UB28 335 aaPredicted RBP10.69□□□□□ -0.7
VRK3-223ENST00000601341 CCBE1Q6UXH8 406 aaPredicted RBP10.69□□□□□ -0.7
VRK3-223ENST00000601341 PLEKHM3Q6ZWE6 761 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 GDPD3Q7L5L3 318 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 RAB43Q86YS6 212 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 GID4Q8IVV7 300 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 CMIPQ8IY22 773 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 PRR22Q8IZ63 422 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 ZNF614Q8N883 585 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 FAM83FQ8NEG4 500 aaPredicted RBP10.69□□□□□ -0.7
VRK3-223ENST00000601341 OR2T33Q8NG76 320 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 OR4C3Q8NH37 302 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 BRIX1Q8TDN6 353 aaKnown RBP10.69□□□□□ -0.7
VRK3-223ENST00000601341 THAP3Q8WTV1 239 aaPredicted RBP10.69□□□□□ -0.7
VRK3-223ENST00000601341 ASB15Q8WXK1 588 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 HPS1Q92902 700 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 OMA1Q96E52 524 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 SLC41A3Q96GZ6 507 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 MCHR1Q99705 422 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 PLA2G12AQ9BZM1 189 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 ZNF160Q9HCG1 818 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 POLE4Q9NR33 117 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.69□□□□□ -0.7
VRK3-223ENST00000601341 ASB6Q9NWX5 421 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 MYOTQ9UBF9 498 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 POLHQ9Y253 713 aa10.69□□□□□ -0.7
VRK3-223ENST00000601341 CDHR4A6H8M9 788 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 TMEM200CA6NKL6 621 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 SCDO00767 359 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 TSPAN2O60636 221 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 UTS2O95399 124 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 HPP00738 406 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 TRAPPC2P0DI81 140 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 TRAPPC2BP0DI82 140 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 NAGAP17050 411 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 CD53P19397 219 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 GTF2E2P29084 291 aaKnown RBP10.68□□□□□ -0.7
VRK3-223ENST00000601341 CDH11P55287 796 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 SELENBP1Q13228 472 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 CAMK2BQ13554 666 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 PGGHGQ32M88 737 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 DESI1Q6ICB0 168 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 GDF7Q7Z4P5 450 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 SCAIQ8N9R8 606 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 OR8D4Q8NGM9 314 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms