RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TMPPEQ6ZT21 453 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 TMPRSS11FQ6ZWK6 438 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 PRICKLE2Q7Z3G6 844 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 ZER1Q7Z7L7 766 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 LSRQ86X29 649 aaPredicted RBP12.9□□□□□ -0.34
UPF1-211ENST00000600868 ZDHHC13Q8IUH4 622 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 CHERPQ8IWX8 916 aaKnown RBP12.9□□□□□ -0.34
UPF1-211ENST00000600868 MEIOBQ8N635 442 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 ICA1LQ8NDH6 482 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 OR10G2Q8NGC3 310 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 MFSD8Q8NHS3 518 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 TAAR8Q969N4 342 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 MIB2Q96AX9 1013 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 SGTBQ96EQ0 304 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 WDYHV1Q96HA8 205 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 PRDM14Q9GZV8 571 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 C20orf141Q9NUB4 165 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 PDP1Q9P0J1 537 aaPredicted RBP12.9□□□□□ -0.34
UPF1-211ENST00000600868 NKX1-2Q9UD57 310 aaPredicted RBP12.9□□□□□ -0.34
UPF1-211ENST00000600868 OAZ3Q9UMX2 235 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 SPTA1P02549 2419 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 PRRC2CQ9Y520 2896 aaKnown RBP12.9□□□□□ -0.34
UPF1-211ENST00000600868 MPDZO75970 2070 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 KMT2BQ9UMN6 2715 aaPredicted RBP12.89□□□□□ -0.35
UPF1-211ENST00000600868 A0A1W2PNR3 127 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 LIPT2A6NK58 231 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 ENO4A6NNW6 628 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 SULT2B1O00204 365 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 TNFSF11O14788 317 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 BCKDKO14874 412 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 SEC14L5O43304 696 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 ATP6V1G2O95670 118 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 CH25HO95992 272 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 BGLAPP02818 100 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 IMPDH2P12268 514 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 IFI30P13284 250 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 EDN3P14138 238 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 RPS5P46782 204 aaKnown RBP12.89□□□□□ -0.35
UPF1-211ENST00000600868 DIO1P49895 249 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 CSNK2A1P68400 391 aaPredicted RBP12.89□□□□□ -0.35
UPF1-211ENST00000600868 SLC35A1P78382 337 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 HSF1Q00613 529 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 SLC34A1Q06495 639 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 MFSD13AQ14CX5 517 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 LAPTM4AQ15012 233 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 ZNF74Q16587 644 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 HBMQ6B0K9 141 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 PGBD2Q6P3X8 592 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 FGD2Q7Z6J4 655 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 PM20D2Q8IYS1 436 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 CDK20Q8IZL9 346 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 HS3ST5Q8IZT8 346 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 OR9Q2Q8NGE9 314 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 OR2V1Q8NHB1 315 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 CPT1CQ8TCG5 803 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 LIPHQ8WWY8 451 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 BPIFA2Q96DR5 249 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 OSBPL10Q9BXB5 764 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 GABARAPL1Q9H0R8 117 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 COQ10BQ9H8M1 238 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 FKRPQ9H9S5 495 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 MGAT4BQ9UQ53 548 aa12.89□□□□□ -0.35
UPF1-211ENST00000600868 SAC3D1A6NKF1 404 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 FTCDNL1E5RQL4 147 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 NPIPA2E9PIF3 369 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 NPIPA3F8WFD2 350 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 H0YC42 278 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 EIF1AYO14602 144 aaKnown RBP12.88□□□□□ -0.35
UPF1-211ENST00000600868 CASQ2O14958 399 aaPredicted RBP12.88□□□□□ -0.35
UPF1-211ENST00000600868 KLF4O43474 513 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 DNPH1O43598 174 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 OR7A10O76100 309 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 GASTP01350 101 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 ANXA8P13928 327 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 MAKP20794 623 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 CBLP22681 906 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 PTGS2P35354 604 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 MLLT10P55197 1068 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 TPD52P55327 224 aaPredicted RBP12.88□□□□□ -0.35
UPF1-211ENST00000600868 CARD18P57730 90 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 RAC3P60763 192 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 RPS3AP61247 264 aaKnown RBP12.88□□□□□ -0.35
UPF1-211ENST00000600868 LTBQ06643 244 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 C19orf57Q0VDD7 668 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 WLSQ5T9L3 541 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 SLC46A3Q7Z3Q1 461 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 STK32CQ86UX6 486 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 EPHX4Q8IUS5 362 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 UBQLNLQ8IYU4 475 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 C10orf53Q8N6V4 93 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 AQP11Q8NBQ7 271 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 OR10D3Q8NH80 312 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 GNPDA2Q8TDQ7 276 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 OSTF1Q92882 214 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 SDCCAG3Q96C92 435 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 FAM46AQ96IP4 442 aaKnown RBP12.88□□□□□ -0.35
UPF1-211ENST00000600868 MOGAT1Q96PD6 335 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 BBC3Q96PG8 261 aaPredicted RBP12.88□□□□□ -0.35
UPF1-211ENST00000600868 FEVQ99581 238 aa12.88□□□□□ -0.35
UPF1-211ENST00000600868 C9orf16Q9BUW7 83 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms