RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 MPP4Q96JB8 637 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 TMEM43Q9BTV4 400 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 COQ3Q9NZJ6 369 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 RIMS3Q9UJD0 308 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 SLC7A7Q9UM01 511 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 RNF6Q9Y252 685 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 ENPP4Q9Y6X5 453 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 V9GYQ6 96 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 COL12A1Q99715 3063 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 TCRBV5S2A0A599 114 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 AHSA1O95433 338 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 STAMBPO95630 424 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 SEMG1P04279 462 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 ENPP1P22413 925 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 IFNA8P32881 189 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 OR2B6P58173 313 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 SLC35A1P78382 337 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 WDR88Q6ZMY6 472 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 CCDC71Q8IV32 467 aaPredicted RBP17.3■□□□□ 0.36
UPF1-209ENST00000600310 ASB5Q8WWX0 329 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 ROBO4Q8WZ75 1007 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 MCUR1Q96AQ8 359 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 SDCCAG3Q96C92 435 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 DNAJA3Q96EY1 480 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 C7orf34Q96L11 122 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 PRSS27Q9BQR3 290 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 ZNF426Q9BUY5 554 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 PTDSS2Q9BVG9 487 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 MMADHCQ9H3L0 296 aaPredicted RBP17.3■□□□□ 0.36
UPF1-209ENST00000600310 NDUFAF4Q9P032 175 aa17.3■□□□□ 0.36
UPF1-209ENST00000600310 PHF3Q92576 2039 aaKnown RBP17.3■□□□□ 0.36
UPF1-209ENST00000600310 LIPT2A6NK58 231 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 CRHP06850 196 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 TMIGD3P0DMS9 266 aaPredicted RBP17.29■□□□□ 0.36
UPF1-209ENST00000600310 FPR1P21462 350 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 CTSSP25774 331 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 CHRNB4P30926 498 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 YAP1P46937 504 aaKnown RBP17.29■□□□□ 0.36
UPF1-209ENST00000600310 ST3GAL3Q11203 375 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 GTF2IRD2BQ6EKJ0 949 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 PPP4R4Q6NUP7 873 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 FCRLAQ7L513 359 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 GTF2IRD2Q86UP8 949 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 SLC43A2Q8N370 569 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 MFSD8Q8NHS3 518 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 RNF128Q8TEB7 428 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 POP5Q969H6 163 aaKnown RBP17.29■□□□□ 0.36
UPF1-209ENST00000600310 ZHX1-C8orf76Q96EF9 292 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 KTI12Q96EK9 354 aaPredicted RBP17.29■□□□□ 0.36
UPF1-209ENST00000600310 LRGUKQ96M69 825 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 EPYCQ99645 322 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 TRIM15Q9C019 465 aa17.29■□□□□ 0.36
UPF1-209ENST00000600310 KIAA1549Q9HCM3 1950 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 TRAV36DV7A0A075B6V5 113 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 J3KTA2 159 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 FFAR1O14842 300 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 SMAD9O15198 467 aaKnown RBP17.28■□□□□ 0.36
UPF1-209ENST00000600310 OR2T1O43869 369 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 EIF1BO60739 113 aaKnown RBP17.28■□□□□ 0.36
UPF1-209ENST00000600310 FZD7O75084 574 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 PRSS23O95084 383 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 IL18BPO95998 194 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 GPIP06744 558 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 KLK2P20151 261 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 H3F3AP84243 136 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 VLDLRP98155 873 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 FOXF2Q12947 444 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 OR7A5Q15622 319 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 IQCCQ4KMZ1 466 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 EEF1A1P5Q5VTE0 462 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 TTC33Q6PID6 262 aaPredicted RBP17.28■□□□□ 0.36
UPF1-209ENST00000600310 ASRGL1Q7L266 308 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 CYP4Z1Q86W10 505 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 P3H2Q8IVL5 708 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 OFCC1Q8IZS5 231 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 OR6S1Q8NH40 331 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 INTS12Q96CB8 462 aaKnown RBP17.28■□□□□ 0.36
UPF1-209ENST00000600310 ZNF300Q96RE9 604 aaPredicted RBP17.28■□□□□ 0.36
UPF1-209ENST00000600310 TAPBPLQ9BX59 468 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 GLRX2Q9NS18 164 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 ZNF629Q9UEG4 869 aaPredicted RBP17.28■□□□□ 0.36
UPF1-209ENST00000600310 SLC7A8Q9UHI5 535 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 POMPQ9Y244 141 aa17.28■□□□□ 0.36
UPF1-209ENST00000600310 FAM32AQ9Y421 112 aaKnown RBP17.28■□□□□ 0.36
UPF1-209ENST00000600310 IGHV3-15A0A0B4J1V0 119 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 AQP12BA6NM10 295 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 FTCDNL1E5RQL4 147 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 CYTIPO60759 359 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 ITGA2P17301 1181 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 RHCEP18577 417 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 RBM34P42696 430 aaKnown RBP17.27■□□□□ 0.36
UPF1-209ENST00000600310 RPS5P46782 204 aaKnown RBP17.27■□□□□ 0.36
UPF1-209ENST00000600310 RNPS1Q15287 305 aaKnown RBP17.27■□□□□ 0.36
UPF1-209ENST00000600310 GUSBP1Q15486 140 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 FAM69AQ5T7M9 428 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 PAQR6Q6TCH4 344 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 LIX1LQ8IVB5 337 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 NKAIN4Q8IVV8 208 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 AQP12AQ8IXF9 295 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 GCNT2Q8N0V5 402 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms