RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 LRRC42Q9Y546 428 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 H0YAE9 185 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 K7EM74 188 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 TP53P04637 393 aaPredicted RBP13.22□□□□□ -0.29
VRK3-212ENST00000596814 TFPIP10646 304 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 CHMP24386 653 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 FKBP2P26885 142 aaKnown RBP13.22□□□□□ -0.29
VRK3-212ENST00000596814 EPHA2P29317 976 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 SLC9A3P48764 834 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 B3GALT5-AS1P59052 145 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 PPIAP62937 165 aaKnown RBP13.22□□□□□ -0.29
VRK3-212ENST00000596814 ADARB1P78563 741 aaKnown RBP13.22□□□□□ -0.29
VRK3-212ENST00000596814 TAF11Q15544 211 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 WIPI1Q5MNZ9 446 aaPredicted RBP13.22□□□□□ -0.29
VRK3-212ENST00000596814 FAM69AQ5T7M9 428 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 C1QL3Q5VWW1 255 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 TTC23Q5W5X9 447 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 Q6ZS92 163 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 KIF18BQ86Y91 864 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 FAM109AQ8N4B1 249 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 KDF1Q8NAX2 398 aaPredicted RBP13.22□□□□□ -0.29
VRK3-212ENST00000596814 TAAR8Q969N4 342 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 DNAJA3Q96EY1 480 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 PTDSS2Q9BVG9 487 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 GRIP2Q9C0E4 1043 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 FKRPQ9H9S5 495 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 NANSQ9NR45 359 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 TP53TG5Q9Y2B4 290 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 ZNF337Q9Y3M9 751 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 CDH10Q9Y6N8 788 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 MGAQ8IWI9 3026 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 LOC100130705A0A1B0GUX0 176 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 BCKDKO14874 412 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 OR2T1O43869 369 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 HCN1O60741 890 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 MT-ATP6P00846 226 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 BGLAPP02818 100 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 POU1F1P28069 291 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 SFTPDP35247 375 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 CRISP1P54107 249 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 PMP22Q01453 160 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 OAFQ86UD1 273 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 CLDN22Q8N7P3 220 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 RBMXL3Q8N7X1 1067 aaKnown RBP13.22□□□□□ -0.29
VRK3-212ENST00000596814 OR6S1Q8NH40 331 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 TEX47Q8TBZ9 253 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 LIPHQ8WWY8 451 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 RELTQ969Z4 430 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 ARL5BQ96KC2 179 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 MOGAT1Q96PD6 335 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 POTEKPQ9BYX7 375 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 EGLN3Q9H6Z9 239 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 ZNF229Q9UJW7 825 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 MED12Q93074 2177 aa13.22□□□□□ -0.29
VRK3-212ENST00000596814 TRAV27A0A087WT01 109 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 SLC16A6O15403 523 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 IGFBP1P08833 259 aaPredicted RBP13.21□□□□□ -0.3
VRK3-212ENST00000596814 CELA3AP09093 270 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 ACADSP16219 412 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 IDUAP35475 653 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 CLK1P49759 484 aaKnown RBP13.21□□□□□ -0.3
VRK3-212ENST00000596814 RAC1P63000 192 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 LTBQ06643 244 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 SLC6A19Q695T7 634 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 RPL13AP3Q6NVV1 102 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 LRRC17Q8N6Y2 441 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 SMPDL3BQ92485 455 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 ARHGAP9Q9BRR9 750 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 MFRPQ9BY79 579 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 PLA2G12AQ9BZM1 189 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 ADNPQ9H2P0 1102 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 OR52D1Q9H346 318 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 TBC1D23Q9NUY8 699 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 SIGLEC7Q9Y286 467 aa13.21□□□□□ -0.3
VRK3-212ENST00000596814 GJE1A6NN92 205 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 ZAR1LA6NP61 321 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 TFECO14948 347 aaPredicted RBP13.2□□□□□ -0.3
VRK3-212ENST00000596814 RCBTB2O95199 551 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 OPN1LWP04000 364 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 ASAH2BP0C7U1 165 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 ZNF24P17028 368 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 GTF2E2P29084 291 aaKnown RBP13.2□□□□□ -0.3
VRK3-212ENST00000596814 SHC1P29353 583 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 GFRA1P56159 465 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 NUP107P57740 925 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 MYBPHQ13203 477 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 KEAP1Q14145 624 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 PTGES3Q15185 160 aaKnown RBP13.2□□□□□ -0.3
VRK3-212ENST00000596814 ZBED5Q49AG3 693 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 Q6ZPB1 254 aaPredicted RBP13.2□□□□□ -0.3
VRK3-212ENST00000596814 ASB18Q6ZVZ8 466 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 MAMDC2Q7Z304 686 aaPredicted RBP13.2□□□□□ -0.3
VRK3-212ENST00000596814 NANOGNBQ7Z5D8 188 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 OR52L1Q8NGH7 329 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 OR8D4Q8NGM9 314 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 OR51A7Q8NH64 312 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 MFSD8Q8NHS3 518 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 OSTF1Q92882 214 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 SLC25A36Q96CQ1 311 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 ZNF570Q96NI8 536 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms