RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 ATE1O95260 518 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 VIMP08670 466 aaKnown RBP13.38□□□□□ -0.27
TRIM28-205ENST00000595028 SLC6A2P23975 617 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 IL32P24001 234 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 LOXP28300 417 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-205ENST00000595028 ARFIP2P53365 341 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 MTPNP58546 118 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 HOXC5Q00444 222 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 SELPLGQ14242 412 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 P2RY6Q15077 328 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 CYP51A1Q16850 503 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 BEX5Q5H9J7 111 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 Q6ZT83 130 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.38□□□□□ -0.27
TRIM28-205ENST00000595028 ATG4DQ86TL0 474 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-205ENST00000595028 COMTD1Q86VU5 262 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 PTOV1Q86YD1 416 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 KISS1RQ969F8 398 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-205ENST00000595028 S100PBPQ96BU1 408 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 ZNF775Q96BV0 537 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-205ENST00000595028 HS3ST6Q96QI5 342 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 MDFIQ99750 246 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 FOXC2Q99958 501 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 POTEKPQ9BYX7 375 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 DLL4Q9NR61 685 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 MRGBPQ9NV56 204 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 ANGPT4Q9Y264 503 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 CSPG4Q6UVK1 2322 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 COL6A5A8TX70 2615 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-205ENST00000595028 LIPT2A6NK58 231 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 A8MVM7 634 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 GPR171O14626 319 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 ADAP00813 363 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 GPIP06744 558 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 COX5AP20674 150 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 FPR1P21462 350 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 AQP1P29972 269 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 LTBQ06643 244 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 RBBP4Q09028 425 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 FOXD4Q12950 439 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-205ENST00000595028 BNIP2Q12982 314 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 ITGADQ13349 1161 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 TSC22D1Q15714 1073 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 TRMT5Q32P41 509 aaKnown RBP13.37□□□□□ -0.27
TRIM28-205ENST00000595028 SFRP5Q5T4F7 317 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 PAQR6Q6TCH4 344 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 WFDC8Q8IUA0 241 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 CCDC103Q8IW40 242 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 ZNF100Q8IYN0 542 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 C11orf65Q8NCR3 313 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 APH1AQ96BI3 265 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 MBD6Q96DN6 1003 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 ZNF607Q96SK3 696 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 HDHD5Q9BXW7 423 aa13.37□□□□□ -0.27
TRIM28-205ENST00000595028 NOSIPQ9Y314 301 aaKnown RBP13.37□□□□□ -0.27
TRIM28-205ENST00000595028 PRORSD1PA6NEY8 169 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 FBP2O00757 339 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 NPIPB7O75200 414 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 CNOT4O95628 575 aaKnown RBP13.36□□□□□ -0.27
TRIM28-205ENST00000595028 HTR2AP28223 471 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 PCBP3P57721 371 aaKnown RBP13.36□□□□□ -0.27
TRIM28-205ENST00000595028 SF3A3Q12874 501 aaKnown RBP eCLIP13.36□□□□□ -0.273e-7■■■□□ 15.6
TRIM28-205ENST00000595028 CEACAM7Q14002 265 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 KEAP1Q14145 624 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 CAPRIN1Q14444 709 aaKnown RBP13.36□□□□□ -0.27
TRIM28-205ENST00000595028 OR7A5Q15622 319 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 GLIPR1L2Q4G1C9 344 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 COQ5Q5HYK3 327 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 C1orf140Q5VVS0 124 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 C6orf89Q6UWU4 347 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 BHLHA15Q7RTS1 189 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-205ENST00000595028 NET1Q7Z628 596 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-205ENST00000595028 ARMC8Q8IUR7 673 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 ALPK1Q96QP1 1244 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 NAA11Q9BSU3 229 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-205ENST00000595028 KAT8Q9H7Z6 458 aaKnown RBP13.36□□□□□ -0.27
TRIM28-205ENST00000595028 SAR1AQ9NR31 198 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 TESQ9UGI8 421 aaKnown RBP13.36□□□□□ -0.27
TRIM28-205ENST00000595028 SLC9A8Q9Y2E8 581 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 STAB1Q9NY15 2570 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 CADP27708 2225 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 RTTNQ86VV8 2226 aa13.36□□□□□ -0.27
TRIM28-205ENST00000595028 AQP7P3A6NL99 342 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 FXYD1O00168 92 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 KLF4O43474 513 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 TPST1O60507 370 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 SERPINB7O75635 380 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 LYZL6O75951 148 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 AHSA1O95433 338 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 IGHV1-2P23083 117 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 ADSLP30566 484 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-205ENST00000595028 PCGF2P35227 344 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 NR1H2P55055 460 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 RGS8P57771 180 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-205ENST00000595028 NCALDP61601 193 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 DMTNQ08495 405 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 KLF10Q13118 480 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 SLC17A1Q14916 467 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 MAPRE2Q15555 327 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms