RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ESRP2Q9H6T0 727 aaKnown RBP5.92□□□□□ -1.46
VPS53-213ENST00000572334 FANCFQ9NPI8 374 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 TIGARQ9NQ88 270 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 CTPS2Q9NRF8 586 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 NDE1Q9NXR1 346 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 CISD1Q9NZ45 108 aaKnown RBP5.92□□□□□ -1.46
VPS53-213ENST00000572334 PLA2G2EQ9NZK7 142 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 KLHL9Q9P2J3 617 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 MKLN1Q9UL63 735 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 B3GALT5Q9Y2C3 310 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 SLC25A15Q9Y619 301 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 IGHV4-30-2A0A087WSY4 118 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 RNF103-CHMP3A0A140T963 221 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 A0A1W2PP18 115 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 OR5H1A6NKK0 313 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 H3BNH8 94 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 H3BNX3 289 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 RNASET2O00584 256 aaKnown RBP5.91□□□□□ -1.46
VPS53-213ENST00000572334 ABCD4O14678 606 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 GYG2O15488 501 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 STX11O75558 287 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 CSTAP01040 98 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 IGHV3-9P01782 118 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 LYNP07948 512 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 ITGA5P08648 1049 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 UBTFL6P0CB48 400 aaPredicted RBP5.91□□□□□ -1.46
VPS53-213ENST00000572334 OR12D1P0DN82 309 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 ZNF12P17014 697 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 SLC7A1P30825 629 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 IDUAP35475 653 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 SERPINB5P36952 375 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 RPL5P46777 297 aaKnown RBP5.91□□□□□ -1.46
VPS53-213ENST00000572334 CCR4P51679 360 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 SLC16A1P53985 500 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 ARPC4P59998 168 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 HPCAP84074 193 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 H3F3AP84243 136 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 SLC25A3Q00325 362 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 MERTKQ12866 999 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 PDK3Q15120 406 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 PPA1Q15181 289 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 MAPK11Q15759 364 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 STK11Q15831 433 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 ETFDHQ16134 617 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 SPDYE7PQ495Y7 208 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 SYT14P1Q58G82 188 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 TNFAIP8L3Q5GJ75 292 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 RNF220Q5VTB9 566 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 SAXO2Q658L1 398 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 NET1Q7Z628 596 aaPredicted RBP5.91□□□□□ -1.46
VPS53-213ENST00000572334 GALNT5Q7Z7M9 940 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 HMGN2P46Q86SG4 172 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 MTDHQ86UE4 582 aaKnown RBP5.91□□□□□ -1.46
VPS53-213ENST00000572334 ANKRD46Q86W74 232 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 HIPK1Q86Z02 1210 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 CCDC103Q8IW40 242 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 NATD1Q8N6N6 113 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 TMCO5AQ8N6Q1 288 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 ZNF781Q8N8C0 355 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 WDR31Q8NA23 367 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 OR10H5Q8NGA6 315 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 RAB8BQ92930 207 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 TUBGCP3Q96CW5 907 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 DNAJA3Q96EY1 480 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 TRMT61AQ96FX7 289 aaKnown RBP5.91□□□□□ -1.46
VPS53-213ENST00000572334 REXO5Q96IC2 774 aaKnown RBP5.91□□□□□ -1.46
VPS53-213ENST00000572334 SLC35G5Q96KT7 338 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 TEX37Q96LM6 180 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 MUS81Q96NY9 551 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 SORT1Q99523 831 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 USB1Q9BQ65 265 aaKnown RBP5.91□□□□□ -1.46
VPS53-213ENST00000572334 BTBD10Q9BSF8 475 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 MRPS26Q9BYN8 205 aaKnown RBP5.91□□□□□ -1.46
VPS53-213ENST00000572334 AMBRA1Q9C0C7 1298 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 OR11A1Q9GZK7 315 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 AKTIPQ9H8T0 292 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 PLGRKTQ9HBL7 147 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 EML4Q9HC35 981 aaKnown RBP5.91□□□□□ -1.46
VPS53-213ENST00000572334 PALMDQ9NP74 551 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 KCNK9Q9NPC2 374 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 TBC1D23Q9NUY8 699 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 ATAD3AQ9NVI7 634 aa5.91□□□□□ -1.46
VPS53-213ENST00000572334 A0A1W2PR80 420 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 ZC3H12DA2A288 527 aaKnown RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 TMEM247A6NEH6 219 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 DUXAA6NLW8 204 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 SULT2B1O00204 365 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 HMGN4O00479 90 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 AP3D1O14617 1153 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 CFLARO15519 480 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 TPD52L2O43399 206 aaKnown RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 TLX2O43763 284 aaPredicted RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 RAD51DO75771 328 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 PDE5AO76074 875 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 PMS2P2O95744 297 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 AK1P00568 194 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 ALDOCP09972 364 aaKnown RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 DHRS4L1P0CG22 281 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 DDX5P17844 614 aaKnown RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 GGT1P19440 569 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms