RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 GPR139Q6DWJ6 353 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 LCN10Q6JVE6 187 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 APOOLQ6UXV4 268 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 CCDC81Q6ZN84 652 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 MAMDC2Q7Z304 686 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 MARCH3Q86UD3 253 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 SATL1Q86VE3 508 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 CCDC71Q8IV32 467 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 PRR22Q8IZ63 422 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 TMEM156Q8N614 296 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 ZNF248Q8NDW4 579 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 GPR119Q8TDV5 335 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 RAB2BQ8WUD1 216 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 SLC25A43Q8WUT9 341 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 APH1BQ8WW43 257 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 THAP4Q8WY91 577 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 GGHQ92820 318 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 ZBTB8AQ96BR9 441 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 C8orf44Q96CB5 159 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 DDIT4LQ96D03 193 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 LRR1Q96L50 414 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 FRMD6Q96NE9 622 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 IL4I1Q96RQ9 567 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 RASL10BQ96S79 203 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 GPX7Q96SL4 187 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 IFT27Q9BW83 186 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 POTEKPQ9BYX7 375 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 DPH1Q9BZG8 443 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 NRSN2Q9GZP1 204 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 UBQLN3Q9H347 655 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 PARD6AQ9NPB6 346 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 MEPEQ9NQ76 525 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 CMC2Q9NRP2 79 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 HPF1Q9NWY4 346 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 WARS2Q9UGM6 360 aaKnown RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 SIGLEC7Q9Y286 467 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 HIF3AQ9Y2N7 669 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 EXOSC1Q9Y3B2 195 aaKnown RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 PCDHGB7Q9Y5F8 929 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 GOLGA4Q13439 2230 aaKnown RBP7.25□□□□□ -1.25
VPS39-213ENST00000570062 SCN3AQ9NY46 2000 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 TMEM200CA6NKL6 621 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 KDM4EB2RXH2 506 aaPredicted RBP7.25□□□□□ -1.25
VPS39-213ENST00000570062 PRR23D1E9PI22 279 aaPredicted RBP7.25□□□□□ -1.25
VPS39-213ENST00000570062 LINC01387J3KSC0 135 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 SEC14L5O43304 696 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 XPNPEP2O43895 674 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 ENTPD6O75354 484 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 OR6A2O95222 327 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 AHSA1O95433 338 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 RAB36O95755 333 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 PRR23D2P0DMB1 279 aaPredicted RBP7.25□□□□□ -1.25
VPS39-213ENST00000570062 MAKP20794 623 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 HTR1FP30939 366 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 OTX2P32243 289 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 ATP6V1E1P36543 226 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 MTNR1AP48039 350 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 BLVRAP53004 296 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 RRADP55042 308 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 CDH15P55291 814 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 FBXW4P57775 412 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 PLAURQ03405 335 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 EMX1Q04741 257 aaPredicted RBP7.25□□□□□ -1.25
VPS39-213ENST00000570062 ST3GAL4Q11206 333 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 AIMP2Q13155 320 aaKnown RBP7.25□□□□□ -1.25
VPS39-213ENST00000570062 IL10RAQ13651 578 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 QPRTQ15274 297 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 ZNF74Q16587 644 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 ST3GAL2Q16842 350 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 COL28A1Q2UY09 1125 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 ARSJQ5FYB0 599 aaPredicted RBP7.25□□□□□ -1.25
VPS39-213ENST00000570062 C3orf38Q5JPI3 329 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 SLC35D3Q5M8T2 416 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 FAM69AQ5T7M9 428 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 LCN1P1Q5VSP4 162 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 UBE2UQ5VVX9 321 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 TMEM236Q5W0B7 351 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 LAIR2Q6ISS4 152 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 ACSM5Q6NUN0 579 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 CBLN3Q6UW01 205 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 B3GNT6Q6ZMB0 384 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 AHSA2Q719I0 299 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 ZNF367Q7RTV3 350 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 PPP1R32Q7Z5V6 425 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 KIF18BQ86Y91 864 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 IL22RA1Q8N6P7 574 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 C10orf53Q8N6V4 93 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 SCAIQ8N9R8 606 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 GATSQ8NAP1 163 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 PSD4Q8NDX1 1056 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 DEFB124Q8NES8 71 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 PROKR2Q8NFJ6 384 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 OR9Q1Q8NGQ5 310 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 OR13F1Q8NGS4 319 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 HAVCR2Q8TDQ0 301 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 PAQR8Q8TEZ7 354 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 ADAMTS14Q8WXS8 1223 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 SAMD8Q96LT4 415 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 SNX18Q96RF0 628 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 LMF1Q96S06 567 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms